Activity for Xuewen Wang
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Xuewen Wang modified a wiki page
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The GMATA will be running well at Linux system. I tested it and works. An alternataive way is to run the command line for GMATA at any other systems: perl gmata.pl -c configureFile -i yourseqfile
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The GMATA will be run well at Linux system. I tested it and works.
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Poornima, Your running looks good. You can find you results in E drive where the output will be in the same directory as your input file. It is better to download the latest R, not the Rstudio.
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Your R installation is not completed. The possible problem is that your system blocked the addition of R path to your enviromental pathway during R installation. You have to add the R path to your system enviromental variable manully. Once the path is correct, you can type "cmd" in run to start a command interface. Then type "Rscript" in the command line. If you can see a discription of R , versionxxxx, it is successful. Then You can continue GMATA.
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How to use I have created a detailed point by point tutorial to show how to install GMATA in file GMATA_installation.PDF . You can download this file at https://sourceforge.net/projects/gmata/files/
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You have to install the e-PCR dependent in Linux. You can dwonload from GMATA source code page: https://sourceforge.net/projects/gmata/files/
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Your R installation is not completed. The possible problem is that your system blocked the addition of R path to your enviromental pathway during R installation. You have to add the R path to your system enviromental variable manully. Once the path is correct, you can type "cmd" in run to start a command interface. Then type "Rscript" in the command line. If you can see a discription of R , versionxxxx, it is successful. Then You can continue GMATA.
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It seems that your R language installation is not correct, or the Enviromental path to R is not set.
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The issue was caused by the wrong directory of your path or missing module of e-PCR. You system will need a dependent of e-PCR or you can set up the correct path to e-PCR in the graphic interface. You download the e-PCR module for Linux and MacOS from GMATA software download page in the sourceforge. You may not need to do anything in windows platform. You can followed the detailed instructions above.
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The issue was caused by the wrong directory of your path or missing module of e-PCR. You system will need a dependent of e-PCR or you can set up the correct path to e-PCR in the graphic interface. You download the e-PCR module for Linux and MacOS from GMATA software download page in the sourceforge. You may not need to do anything in windows platform. You can followed the detailed instructions below.
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Any question and help are welcome at this topic Here (2017-04-24) I updated instruction for installation at Linux and Mac OS . 1) Primer3 dependent The dependent for Primer3 can be downloaded from https://sourceforge.net/projects/primer3/files/primer3/ to make sure the downloaded version for in and out format is : -io_version=3 you can try the version ID from command line 2) e-PCR dependent e-PCR is needed for emapping in Linux and Mac OS. I backed up e-PCR here at download page for GMATA software...
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Any question and help are welcome at this topic Here (2017-04-24) I updated instruction for installation at Linux and Mac OS . 1) Primer3 dependent The dependent for Primer3 can be downloaded from https://sourceforge.net/projects/primer3/files/primer3/ to make sure the downloaded version for in and out format is : -io_version=3 you can try the version ID from command line 2) e-PCR dependent e-PCR is needed for emapping in Linux and Mac OS. I backed up e-PCR here at download page for GMATA software...
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Here I updated instruction for installation at Linux and Mac OS . 1) Primer3 dependent The dependent for Primer3 can be downloaded from https://sourceforge.net/projects/primer3/files/primer3/ to make sure the downloaded version for in and out format is : -io_version=3 you can try the version ID from command line 2) e-PCR dependent e-PCR is needed for emapping in Linux and Mac OS. I backed up e-PCR here at download page for GMATA software website. to download the version for e-PCR module,So you can...
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Dossa, The emapping fucntion of GMATA allows multiple DNA sequences . You can put...
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Komivi, Great to know software GMATA is working in your Windows 10 now. Xuewen
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Glad to know that you made GMATA work for you now. Xuewen 2016-09-08 01:32:38，madhusudhana...
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Komiv, Glad to answer your question here. You don't need to unzip the file “GMATA.jar”....
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Komiv, Glad to answer your question here. You don't need to unzip the file “GMATA.jar”....
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