Include cached Galaxy test-data in distribution
Fix symlinks by specifying relative targets
Add more tests for variant_annotation module
fix wrong alleles in variant reports
fixed by [2482ec]
Reverse-complement EFF allele when reverting ALT during rebase
mimodd reheader bug with renaming ref sequences in BAM
correction to the correction: the real cause of the issue is that the SnpEff effect allele (which SnpEff writes correctly in every case) can get out of sync with the ALT column during rebasing (which may rv-complement ALT alleles, but doesn't know about SnpEff effects fields).