Activity for Tom Terwilliger
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Tom Terwilliger committed [r25689]
clean clutter
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Add test for variable size of emma models
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fix mistake in emma transferring info from inpu...
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clean clutter
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Fix bug in emma pdb-output option
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clean_clutter
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Make output_directory if missing
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Update region-weight to 40 in segment_and_split...
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Fix mtz output
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Change mtz2map to use sg symmetry when calculat...
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minor fixes
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clean clutter
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Allow fixed b_iso/k_sharpen etc in auto_sharpen
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specify output directory for maps; raise sorry ...
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clean clutter
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Update map_to_model and segment_and_split to cr...
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Update map_to_model and segment_and_split to cr...
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Update map_to_model and segment_and_split to cr...
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Allowing sharpening of local maps
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Fix bug in ncs to require 3 ncs operators for a...
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Fix minor bug where wrong symmetry was used on ...
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change default residual to adjusted_sa
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Allow specific sharpening parameters
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clean_clutter
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Update map_tools to use new version of density_...
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Specify add_mask in call to density_modify_in_m...
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clean clutter
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Fix minor bug in segment_and_split where b_shar...
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catch case where no methods are specified for a...
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clean_clutter
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Put back new version after fixing bugs
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Revert accidentally committed version of segmen...
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clean clutter
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Fix bug in case where refinement of sharpening ...
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Fix mistake where normalization was missed
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Fix output where out=log was missing in map_box
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Fix import
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cleanclutter
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Finish moving segment_and_split_map back to maptbx
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Move segment_and_split back to maptbx, with lim...
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Moving segment_and_split_map.py refine_sharpeni...
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Moving segment_and_split_map.py refine_sharpeni...
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Minor recoding in segment_and_split
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clean clutter
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Fix missing parameter
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clean clutter
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Allow optimization of sharpening in various way...
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limit solvent fraction from 0.001 to 0.999
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clean clutte
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clean clutter
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clean clutter
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Add refinement for sharpening based on kurtosis...
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allow automatic point-group generation, rotatio...
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Clean clutter
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Catch case where strands not found in find_ss_f...
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Allow moving ncs operators inside cell in space...
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Add test for space-group-symmetry to NCS
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clean clutter
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Allow map_to_model to run on crystal structures
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fix typo
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fix typo
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Auto-sharpen based on b_iso=10*resolution in se...
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minor fix in segment_and_split_map
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Add sharpening with threshold to segment_and_split
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Move breakpoint to scitbx/math
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clean up map_to_model output
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Fix typo
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fix typo
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Use hybrid-36 in find_ss_from_ca
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clean clutter
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minor change to catch case were several chain t...
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Update segment_and_split_map with minor changes
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clean clutter and fix int vs float
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Auto-lower resolution in segment_and_split_map ...
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Require resolution for segment_and_split_map
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Make use of d_min and d_min_ratio for sharpenin...
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clean clutter
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clean clutter
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Update breakpoint and segment_and_split_map
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clean clutter
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restoring prev version
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Add tool to find breakpoint in Y vs X fitted by...
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Cleal clutter
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Allow separate chain types during map_to_model
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Use assign_sequence not replace_side_chains in ...
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Fix adjust_magnification return in ncs.py
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clean clutter
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Forgot to apply the magnification to ncs file
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update ncs and map file names with magnification
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clean clutter
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clean clutter
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Add magnification to segment_and_split_map, ncs...
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Allow sorting of helical ncs operators
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Update ncs to allow magnification
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clean clutter and add a ) to mmtbx/building/alt...
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clean clutter
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Update printout from segment_and_split_map
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Fix output of map_box to print out total_shift_...
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clean clutter
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Add boundary radius so that expansion of au doe...
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