clean clutter
Add test for variable size of emma models
fix mistake in emma transferring info from inpu...
clean clutter
Fix bug in emma pdb-output option
clean_clutter
Make output_directory if missing
Update region-weight to 40 in segment_and_split...
Fix mtz output
Change mtz2map to use sg symmetry when calculat...
minor fixes
clean clutter
Allow fixed b_iso/k_sharpen etc in auto_sharpen
specify output directory for maps; raise sorry ...
clean clutter
Update map_to_model and segment_and_split to cr...
Update map_to_model and segment_and_split to cr...
Update map_to_model and segment_and_split to cr...
Allowing sharpening of local maps
Fix bug in ncs to require 3 ncs operators for a...
Fix minor bug where wrong symmetry was used on ...
change default residual to adjusted_sa
Allow specific sharpening parameters
clean_clutter
Update map_tools to use new version of density_...
Specify add_mask in call to density_modify_in_m...
clean clutter
Fix minor bug in segment_and_split where b_shar...
catch case where no methods are specified for a...
clean_clutter
Put back new version after fixing bugs
Revert accidentally committed version of segmen...
clean clutter
Fix bug in case where refinement of sharpening ...
Fix mistake where normalization was missed
Fix output where out=log was missing in map_box
Fix import
cleanclutter
Finish moving segment_and_split_map back to maptbx
Move segment_and_split back to maptbx, with lim...
Moving segment_and_split_map.py refine_sharpeni...
Moving segment_and_split_map.py refine_sharpeni...
Minor recoding in segment_and_split
clean clutter
Fix missing parameter
clean clutter
Allow optimization of sharpening in various way...
limit solvent fraction from 0.001 to 0.999
clean clutte
clean clutter
clean clutter
Add refinement for sharpening based on kurtosis...
allow automatic point-group generation, rotatio...
Clean clutter
Catch case where strands not found in find_ss_f...
Allow moving ncs operators inside cell in space...
Add test for space-group-symmetry to NCS
clean clutter
Allow map_to_model to run on crystal structures
fix typo
fix typo
Auto-sharpen based on b_iso=10*resolution in se...
minor fix in segment_and_split_map
Add sharpening with threshold to segment_and_split
Move breakpoint to scitbx/math
clean up map_to_model output
Fix typo
fix typo
Use hybrid-36 in find_ss_from_ca
clean clutter
minor change to catch case were several chain t...
Update segment_and_split_map with minor changes
clean clutter and fix int vs float
Auto-lower resolution in segment_and_split_map ...
Require resolution for segment_and_split_map
Make use of d_min and d_min_ratio for sharpenin...
clean clutter
clean clutter
Update breakpoint and segment_and_split_map
clean clutter
restoring prev version
Add tool to find breakpoint in Y vs X fitted by...
Cleal clutter
Allow separate chain types during map_to_model
Use assign_sequence not replace_side_chains in ...
Fix adjust_magnification return in ncs.py
clean clutter
Forgot to apply the magnification to ncs file
update ncs and map file names with magnification
clean clutter
clean clutter
Add magnification to segment_and_split_map, ncs...
Allow sorting of helical ncs operators
Update ncs to allow magnification
clean clutter and add a ) to mmtbx/building/alt...
clean clutter
Update printout from segment_and_split_map
Fix output of map_box to print out total_shift_...
clean clutter
Add boundary radius so that expansion of au doe...