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• 4 years ago

  Toni posted a comment on discussion External tools: Density Profile and Diffusion Coefficient

  Sure, https://github.com/giorginolab/vmd_diffusion_coefficient/ And https://github.com/giorginolab/vmd_density_profile Il ven 6 mag 2022, 19:29 Robert Coffman korash@users.sourceforge.net ha scritto: Is there an updated link for these external tools? multiscalelab.org seems to be for sale. Welcome https://sourceforge.net/p/membplugin/discussion/external_tools/thread/067e0582/?limit=25#bed8 Sent from sourceforge.net because toni.giorgino@gmail.com is subscribed to https://sourceforge.net/p/membplugin/discussion/external_tools/...

• 7 years ago

  Toni posted a comment on discussion General Discussion

  Dear Anjela, our analysis (hence the code) assumes an “almost planar” bilayer. Yours is pretty strongly curved. What’s happening (as far as I can tell) is that the plane-fitting is failing and so is the upper/lower lipid assignment. Maybe some future version… Best TG

• 1 decade ago

  Toni posted a comment on discussion External tools: Density Profile and Diffusion Coefficient

  Hi. Which tool? If you are able to get a plot, you'll find a couple of ASCII export...

• 1 decade ago

  Toni posted a comment on discussion External tools: Density Profile and Diffusion Coefficient

  Hi Gustaf, Which tool? Please provide a link to the instructions. Il 11/gen/2016...

• 1 decade ago

  Toni created ticket #3

  Provide non-root installation instructions?

• 1 decade ago

  Toni posted a comment on discussion External tools: Density Profile and Diffusion Coefficient

  Hi, there is one more line to be added - please see https://github.com/tonigi/vm...

• 1 decade ago

  Toni modified a wiki page

  MembraneThickness

• 1 decade ago

  Toni modified a wiki page

  MembraneThickness

• 1 decade ago

  Toni modified a wiki page

  MembraneThickness

• 1 decade ago

  Toni modified a wiki page

  MembraneThickness

• 1 decade ago

  Toni modified a wiki page

  MembraneThickness

• 1 decade ago

  Toni modified a wiki page

  LipidInterdigitation

• 1 decade ago

  Toni modified a wiki page

  LipidInterdigitation

• 1 decade ago

  Toni modified a wiki page

  LipidInterdigitation

• 1 decade ago

  Toni modified a wiki page

  LipidInterdigitation

• 1 decade ago

  Toni modified a wiki page

  LipidInterdigitation

• 1 decade ago

  Toni modified a wiki page

  LipidInterdigitation

• 1 decade ago

  Toni posted a comment on discussion General Discussion

  A paper describing MEMBPLUGIN, the free membrane analysis plugin for VMD, is now...

• 1 decade ago

  Toni modified a wiki page on membplugin

  Home

• 1 decade ago

  Toni modified a wiki page on membplugin

  GeneralRequirements

• 1 decade ago

  Toni modified a wiki page on membplugin

  Home

• 1 decade ago

  Toni modified a wiki page on membplugin

  LipidTilt

• 1 decade ago

  Toni modified a wiki page on membplugin

  ScdOrderParameter

• 1 decade ago

  Toni modified a wiki page on membplugin

  Installation

• 1 decade ago

  Toni modified a wiki page on membplugin

  MembraneThickness

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