Taz

I have a 151bp sequence which I want to see if part or all of it would map to other regions of the mouse genome. I have currently tried the following: ref=/path/to/Ensembl_index_GTF_Mus_musculus_GRCm38_87/Mus_musculus.GRCm38.dna.primary_assembly.fa in=/path/to/Zeb2os_Overlap/Zeb2os_overlap_with_Zeb2.fa out=mapped_$(date +"%Y%m%dT%H%M").txt bbmap.sh ref=$ref in=$in outm=$out minratio=0.4 minid=0.4 Is this the correct way to do this?