Anastasia Koch

Hi I was hoping for some advice for bacterial Hi-C data. I have a 3D model in PDB format and was looking to convert it to .gss fomart to be used with GMOL. However the organism I'm working with only has one chromosome and no real fibres or loci. I was wondering if those files could be left empty or omitted during conversion. Any help/advice would be greatly appreciated. Thanks Tash