Activity for Tanya Berardini
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Tanya Berardini posted a comment on ticket #600
From the paper: "We also found that MIR165A and MIR166A are expressed in the abaxial...
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Hi David, Thanks very much for the input. I think that you are right! I think I will...
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NTR for cone matrix sheath
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Added: +id: GO:0090658 +name: cone matrix sheath +namespace: cellular_component +def:...
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Reviewing this thread, I agree with Peter. The definition can be interpreted as 'THROUGH'...
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I suggest: interphotoreceptor matrix --[p] cone matrix sheath GO:new (as you proposed)...
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Consulting with Moni (Munoz-Torres) on this but she's away for the next two weeks....
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The latest plan. create new term CST complex in the place of the current GO:0070188...
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NTR for cone matrix sheath
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Needs an is_a parent. Suggestions welcome otherwise I will need to do some research....
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NTR: locomotor gait pattern
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David - may I request your input on this request, please? Locomotory behavior def:...
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Done. Thanks for the suggestion.
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tyrosine kinase binding parentage
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fixed
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inappropriate parent for sequestering of copper ion
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tyrosine kinase binding parentage
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NTR: locomotor gait pattern
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inappropriate parent for sequestering of copper ion
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query about threonylcarbamoyladenosine biosynthesis
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I think this should do it: [Term] id: GO:0070525 -name: threonylcarbamoyladenosine...
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possible new term:Telomeric loop dismantling or negative regulation of telomeric loop formation
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Added: +id: GO:0090657 +name: telomeric loop disassembly +namespace: biological_process...
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Edited version: name: telomeric loop disassembly syn: T loop disassembly def: The...
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new term: double-stranded/single-stranded junction telomeric DNA binding
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Changes: -is_a: GO:0043566 ! structure-specific DNA binding +is_a: GO:0000406 ! double-strand/single-strand...
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Done.
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glial cell derived neurotrophic factor
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possible new term:Telomeric loop dismantling or negative regulation of telomeric loop formation
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It makes sense to create a new term for the disassembly. Will look into this more...
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new term: double-stranded/single-stranded junction telomeric DNA binding
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I'll just add that new parent next week. Today is a holiday here in the US!
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There are 8 terms. Will do.
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glial cell derived neurotrophic factor
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There are 12 terms. Will do.
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new term/s request: anti-recombinase activity & child D loop dissociation
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Added: +id: GO:0090656 +name: t-circle formation +namespace: biological_process +def:...
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new term request: Formation of telomeric circles
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new term: double-stranded/single-stranded junction telomeric DNA binding
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[Term] +id: GO:0090655 +name: double-stranded/single-stranded junction telomeric...
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After thinking about this some more, I decided to add this term as a direct child...
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Assigning to you, David, for secondary review. Thanks.
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replaced-by cardinality violations
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Eyeballed. In my opinion, we should substitute 'consider' for all the 'replaced_by'...
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From ChEBI: Dear Submitter, We are writing to inform you that your submission: submission:...
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You're welcome!
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Apical/Basolateral Cytoplasm and Recycling Endosome term request
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Added: [Term] +id: GO:0090651 +name: apical cytoplasm +namespace: cellular_component...
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Apical/Basolateral Cytoplasm and Recycling Endosome term request
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also apical cytoplasm: part of apical part of cell is_a cytoplasmic part basolateral...
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Revised definition: Interacting selectively and non-covalently with the junction...
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-is_a: GO:0043234 ! protein complex +is_a: GO:0055029 ! nuclear DNA-directed RNA...
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add parent for GO:0005658 alpha DNA polymerase:primase complex
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Moved.
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add parent for GO:0005658 alpha DNA polymerase:primase complex
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GO:0030289 protein phosphatase 4 complex - expand def
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-def: "The complex formed by the catalytic subunit of protein phosphatase 4 plus...
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Added: +id: GO:0090649 +name: response to oxygen-glucose deprivation +namespace:...
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response to oxygen-glucose deprivation
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response to environmental enrichment
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Added: +id: GO:0090648 +name: response to environmental enrichment +namespace: biological_process...
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From the review: Telomeric circle. An extrachromosomal duplex or single-stranded...
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new term request: Formation of telomeric circles
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XBP1 unconventional splicing
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You should also add 'HAC1-type intron splice site recognition and cleavage' as a...
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add parent for GO:0005658 alpha DNA polymerase:primase complex
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GO:0030289 protein phosphatase 4 complex - expand def
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What's the CP? :) Complex Portal?
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How about: Any process that results in a change in state or activity of an organism...
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Is it always 'novel objects' ? You requested the synonym "response to the introduction...
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Hi Stan, Would my modified definition work for you? Thanks, Tanya
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Hi Stan, Following up on my question from a couple of weeks ago. Thanks, Tanya
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Can you please also suggest a definition? Is the binding to either ds telomeric DNA...
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ER proteasome terms
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Terms have been made obsolete.
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Annotation check: GO:0051488 (96 annotations, 20 EXP)activation of anaphase-promoting...
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Annotation check: GO:0051488 (96 annotations, 20 EXP)activation of anaphase-promoting...
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I've requested a new term 'tRNA threonylcarbamoyladenosine' to represent the threonylcarbamoyladenosine...
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GO:0090645 APC-Cdc20 complex inhibitor activity
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This will be fixed when https://sourceforge.net/p/geneontology/ontology-requests/11589/...
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Close when ready. Thanks, Chris.
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I'm going to send an obsoletion email for these: GO:0090302 APC-Cdc20 complex activity...
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age-dependent behavioral decline
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Done: id: GO:0035982 name: age-dependent behavioral decline namespace: biological_process...
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I can add the 'tRNA modification' parent but the small molecule parentage will appear...
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age-dependent behavioral decline
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IMHO, membrane insertase activity fits into the def of transporter activity: "Enables...
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This seems ok to me, Val. There may be other cases where it's less clear but this...
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Sent today: Dear all, The proposal has been made to obsolete: ER proteasome complex...
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Note that the term, 'GO:0000835 ER ubiquitin ligase complex' will lose the parentage...
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I will send out an obsoletion alert tomorrow. Proposal is to obsolete ST-complex...
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Assigning to you, Chris. Please check out the discussion so far. Thanks very muc...
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Incorrect inter-ontology link ?
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Hi Pascale, In this particular case, CLN3 does appear to be lysosomal. From the paper,...
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request for review of definition for UV-A wavelength
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Hi Mike, I've updated all the UV wavelengths, not just UV-A. Thanks for the feedback....
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Hi Stan, The definition of your proposed terms ("...as a result of a change in the...
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Hi Stan, Should it be '...absence of oxygen and glucose" or '...deprivation of oxygen...
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Talking about obsoleting the following terms because of lack of proof of existence...
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request for review of definition for UV-A wavelength
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