AV: small improvements to display of the similarity info.
AV: clarified output strings as warnings.
AV: fixed the file existence check to also accommodate existence of only one of the two channels (525, 610) in recording.
AV: changed the threshold for activity similarity to be slightly lower than 1 to avoid check failures from rounding errors.
adding a "verbose" optional argument to plotBSTRP.m to monitor function progress - HL
Updating a comment field in register_multilayer.m - HL
Fixed for the case of no lab notes found (when the paths search gives no result), with initializing an empty variable that was otherwise not initialized if no page is found.
schitris: median act was computed twice, instead of only once.
Added 4 matplotlib colormaps, related GNU license, and a divergent colormap function - HL
ES: added another argument to control y position of scale bar
ES: changed last three arguments in plotERP.m to optional ones
ES: plotERP does not automatically create figure object anymore
updated the file selection instruction to not load the .bin file.
fixed parsing of the NaN paradigm fields in the old data (when paradigm field was not introduced yet) based on comment fields.
updating plotBSTRP to default to mean +- sd, instead of mean +- prctile - HL
generate_proj_meta.m: re-enabling the "raw_act" varargin to allow non-psmoothed 2p and wf data in proj metas - ladrhugo
generate_proj_meta.m: fixed a somewhat amusing but critical bug for the mouse EEG pipeline, by replacing zeroShiftBandPass with the intended zeroShiftNotch filter (ladrhugo)
adding Automatic Multi Scale Peak Detection (AMPD) to the core code
WF_commodore.m: reverting changes from last file commit due to unexpected behavior with the rest of core code - HL
updating WF_commodore.m to allow for more plotting behaviours, as well as allowing user-specified time intervals - HL
ES: added EEG check functions for gratings and for spectrum plus necessary helper functions to core code
shift_data can now switch between padarray (toolbox required) vs repmat (slower, core matlab code) - HL
get_eeg_times: fixed a typo and an error handling issue
updating wid_adata_check to work independently of the number of rois - ladrhugo
new wid_adata_check tests
ES: script to create eeg electrode template
ES: plotting template for eeg positions
ES: added roi template for just eeg electrodes
TestingGround - wid_adata_check_eegtest.m
generate_proj_meta: fix to an error in the behaviour of combined EEG and widefield experiments, which caused only the first cell of a proj_meta file to be populated with EEG data
calc_widefield_act: reverted to and committed previous version again - sorry, this is more complicated since the 2ch case is mostly ignored when saving registration_parameters
calc_widefield_act: changed initial call to Adata class call; changed line 39ff to accommodate 1ch and 2ch cases
ES: added plotting template for EEG Ring Rois
Implementation of runningState filtering. Three cases: 'all' - takes the entire data. 'running' - compute correlations on running bouts only. 'stationary' - compute correlations on stationary bouts only.
assign_aux_method.m : adding EEGdisconnect to the list of aux channels
calc_widefield_act.m: also updated the 2ch version for single conversion at the ROI level
calc_widefield_act.m now converts data to single at the ROI level
removed 'template' from inputs (TK)
Analysis: rolling back register_exp_fixoutliers.m, was an upstream error
Analysis: fixed a bug in the register_exp_fixoutliers.m for single-plane 2p recordings
LoadData: faster (dx,dy) correction for 2p movies (post-motion registration)
RoiQuest: update to make ROIs work in single z-plane recordings
TestingGround: testing speed improvements to (dx,dy) correction on 2p data
Last modifications to save data as single in adata
updated docs and channel remapping for load_EEG function
stroedua: added angle function to 12_Widefield used by eeg ring roi template, important in process of dividng the rings into different regions
stroedua - increased sing size in eeg ring template
stroedua: added function to create wf + eeg template