Activity for Eduard Stroukov
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Eduard Stroukov committed [r1938] on Calliope
AV: small improvements to display of the similarity info.
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AV: clarified output strings as warnings.
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AV: fixed the file existence check to also accommodate existence of only one of the two channels (525, 610) in recording.
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AV: changed the threshold for activity similarity to be slightly lower than 1 to avoid check failures from rounding errors.
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adding a "verbose" optional argument to plotBSTRP.m to monitor function progress - HL
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Updating a comment field in register_multilayer.m - HL
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Fixed for the case of no lab notes found (when the paths search gives no result), with initializing an empty variable that was otherwise not initialized if no page is found.
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schitris: median act was computed twice, instead of only once.
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Added 4 matplotlib colormaps, related GNU license, and a divergent colormap function - HL
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ES: added another argument to control y position of scale bar
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ES: changed last three arguments in plotERP.m to optional ones
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ES: plotERP does not automatically create figure object anymore
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updated the file selection instruction to not load the .bin file.
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fixed parsing of the NaN paradigm fields in the old data (when paradigm field was not introduced yet) based on comment fields.
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updating plotBSTRP to default to mean +- sd, instead of mean +- prctile - HL
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generate_proj_meta.m: re-enabling the "raw_act" varargin to allow non-psmoothed 2p and wf data in proj metas - ladrhugo
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generate_proj_meta.m: fixed a somewhat amusing but critical bug for the mouse EEG pipeline, by replacing zeroShiftBandPass with the intended zeroShiftNotch filter (ladrhugo)
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adding Automatic Multi Scale Peak Detection (AMPD) to the core code
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WF_commodore.m: reverting changes from last file commit due to unexpected behavior with the rest of core code - HL
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updating WF_commodore.m to allow for more plotting behaviours, as well as allowing user-specified time intervals - HL
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ES: added EEG check functions for gratings and for spectrum plus necessary helper functions to core code
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shift_data can now switch between padarray (toolbox required) vs repmat (slower, core matlab code) - HL
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get_eeg_times: fixed a typo and an error handling issue
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updating wid_adata_check to work independently of the number of rois - ladrhugo
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new wid_adata_check tests
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ES: script to create eeg electrode template
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ES: plotting template for eeg positions
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ES: added roi template for just eeg electrodes
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TestingGround - wid_adata_check_eegtest.m
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generate_proj_meta: fix to an error in the behaviour of combined EEG and widefield experiments, which caused only the first cell of a proj_meta file to be populated with EEG data
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calc_widefield_act: reverted to and committed previous version again - sorry, this is more complicated since the 2ch case is mostly ignored when saving registration_parameters
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calc_widefield_act: changed initial call to Adata class call; changed line 39ff to accommodate 1ch and 2ch cases
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ES: added plotting template for EEG Ring Rois
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Implementation of runningState filtering. Three cases: 'all' - takes the entire data. 'running' - compute correlations on running bouts only. 'stationary' - compute correlations on stationary bouts only.
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assign_aux_method.m : adding EEGdisconnect to the list of aux channels
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calc_widefield_act.m: also updated the 2ch version for single conversion at the ROI level
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calc_widefield_act.m now converts data to single at the ROI level
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removed 'template' from inputs (TK)
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Analysis: rolling back register_exp_fixoutliers.m, was an upstream error
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Analysis: fixed a bug in the register_exp_fixoutliers.m for single-plane 2p recordings
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LoadData: faster (dx,dy) correction for 2p movies (post-motion registration)
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RoiQuest: update to make ROIs work in single z-plane recordings
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TestingGround: testing speed improvements to (dx,dy) correction on 2p data
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Last modifications to save data as single in adata
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updated docs and channel remapping for load_EEG function
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stroedua: added angle function to 12_Widefield used by eeg ring roi template, important in process of dividng the rings into different regions
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stroedua - increased sing size in eeg ring template
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stroedua: added function to create wf + eeg template
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