krishna

Two more questions: 3) If we have PL or GL field in VCF file, would it be automatically included in the analysis by LM3 or we must make a separate ped file with PL info ? 4) how to make a ped file with posteriors (from PL) for LM3. Right now my ped file does not contain posterior info.

Dear All, 1) If the sex of offsprings in a family is not available can I set it to 0 in the ped file , while I set FATHER to 1 and MOTHER to 2 2) Is there a way to visualize ordered markers into graphical format like genetic map of LGs seen in publications. I understand we can convert ordered markers of a given chromsome into dot file but that doesnt appear like standard LG image.