User Activity
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Posted
a comment
on
ticket #261
on
Whole-Genome Shotgun Assembler
CA support ended in 2016. You should contact the MaSuRCA support team instead. Are you specifying doFragmentCorrection=0 in the MaSuRCA config? That is not going to work, it's a CA option not a MaSuRCA option. You need to run the CA command MaSuRCA is running but with the added parameter.
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Posted
a comment
on
ticket #341
on
Whole-Genome Shotgun Assembler
The error message is that you do not have sufficient coverage in corrected reads...
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Posted
a comment
on
ticket #32
on
Whole-Genome Shotgun Assembler
20X coverage is the minimum recommended for Canu so you can give it a shot with the...
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Posted
a comment
on
ticket #32
on
Whole-Genome Shotgun Assembler
This looks like an internal blasr error so restarting won’t likely fix it (the match...
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Posted
a comment
on
ticket #340
on
Whole-Genome Shotgun Assembler
It sounds like your frg is incorrect or your data is bad. The frg file specifies...
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Posted
a comment
on
ticket #28
on
Whole-Genome Shotgun Assembler
FastqToCA requires fastq input not fasta so you’ll have to add quality values so...
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Posted
a comment
on
ticket #28
on
Whole-Genome Shotgun Assembler
Yes, you’d have to first convert it to a frg format using fastqToCA. However, I’d...
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Posted
a comment
on
ticket #27
on
Whole-Genome Shotgun Assembler
Canu does not support any assembly using Illumina reads. It is designed for only...
Personal Data
- Username:
- skoren
- Joined:
- 2007-03-12 14:26:19
Projects
This is a list of open source software projects that Sergey Koren is associated with:
- AMOS AMOS is a collection of tools for genome assembly Last Updated:
- TIGR Closure Tools Last Updated:
- Whole-Genome Shotgun Assembler Last Updated: