fix Optimize
I see! This works perfectly. Thanks for clearing that up. On Wed, May 17, 2017 at 12:23 AM, Bob Hanson hansonr@users.sf.net wrote: Jmol is doing what it is supposed to do. These values should be in atom.occupancy, not atom.property_occupancy. If you must have them in property_occupancy, then just prior to writing the file, issue: {}.occupancy = {}.property_occupancy so that they get copied to the field that is written to the PDF files as the "occupancy". Same goes for temperature. Bob [bugs:#592]...
occupancy and temperature values not written to PDB