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• 6 years ago

  Ryan posted a comment on discussion General Discussion

  Ah, thank you

• 6 years ago

  Ryan posted a comment on discussion General Discussion

  Hello, I was trying to use the writhe observable in my oxDNA simulation, but I received the error that it was not meant to be used for DNA or RNA. How can one use it? Also, What is the purpose of the DNAnalysis executable ? Thank you.

• 6 years ago

  Ryan posted a comment on discussion General Discussion

  Hello, I was wondering how dd12.pdb (a pdb file in utils) was generated?

• 6 years ago

  Ryan posted a comment on discussion General Discussion

  thanks! its working now

• 6 years ago

  Ryan posted a comment on discussion General Discussion

  Hello, I am running oxDNA on ubuntu, when I try to use the generate.py I get the following error File "./generate.py", line 162, in <module> main() File "./generate.py", line 159, in main read_strands(filename, box_side) File "./generate.py", line 128, in read_strands start_pos=cdm, double=bool_double, circular=bool_circular), check_overlap=True) File "/oxDNA_2.4_RJUNE2019/oxDNA/UTILS/generators.py", line 89, in generate if sequence == None: ValueError: The truth value of an array with more than...

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