Rodrigo Baptista

Hi Adam, I'm currently using PBJelly to extend/fill gaps in my assembly but here is a problem, most of my gaps were generated with unknown sizes, (1000 bp). My main idea is to extend the "contig region" and in some cases better recover the telomere information of some chromosomes. The problem is that some of the unknown size gaps were filled and I believe that they are not "real" fills, it is maybe happening because of the unknown size gap length issue of my current assembly. There is any parameter...