Rbeinart

Hello, I have a question about the output files. I’m trying to use Abacas to order contigs against a reference genome. If I look at the .crunch file, it looks like my first scaffold aligns to position 32399 in my reference genome. Yet when I look at the pseudomolecule fasta file, it doesn’t begin with 32399 N’s. It begins with my first scaffold sequence. I’d like to use the ordered contigs as input for Mauve and/or BRIG. I’ve gotten kind of odd results uploading the pseudomolecule WITH N's output...

Hello, I'm having the below problem with BBsplit. If I run the bbsplit.sh just to...

Hi there, the contig did not disappear in that version, thank you!

Sorry to be clear, I am having the issue on v3.3. That's what I have been working...

So then is there anything I can do about this problem?

Hi there, Thanks for the prompt reply!! So I downloaded v3.3 and the jar file is...

Hi there, Thanks for the prompt reply!! So I downloaded v3.3 and the jar file is...

Hi again, While working with my Metawatt output downstream, I have noticed that the...