Ramesh Babu

Dear Expert, I have done VBM analysis using spm12. Now I would like to perform roi analysis using MaraBar. Before downloading and installing this software I would like to know whether this will work in spm12. Your information will be helpful for my research. Thanks Ramesh

Dear Nick, Thank you very much. It will be very helpful for me if you send me the full paper. Thanks Ramesh

Dear Nick, I have downloaded example data for Atropos and Brain Extraction example. I found template, priori and mask images in the downloaded folder. By using the scripe I got the same result as given the example. I have created tempalte using my data by using various template command. I got a good template. But how to create mask from the template and priori to preceed further? What are the steps should I follow to create atlas with label? Thanks Ramesh

Dear Nick, Thank you for your suggesstions. It is encoursging to me. I request you to have a look on the attached log file (which I saved from terminal), in some places I notice "core dumped" (in line 334, 347, ..) and "not found" (in line 2135, 2149....). Is it indicating error? Please clarify. And I want to build atlas & label and tissue probability map. Which model/script is best suitable for this? Thanks Ramesh

Dera Nick, Happy to see your openion. I have few questions. 1. For template creation using 40 data which script should I use? is it templateCommand.sh or other scripts? 2. I want to select one of the data as initial template. How to modify in the script to include initial template? 3. I have 3 groups including control. Should I select data only from controll group or randomly from all the groups? Thanks Ramesh

Dear Nick, I analyzed by using all the scripts found in the example folders for face and brain. I request you to have a look on the attached images & log report and give your openion. I used 3 subjects T1 MRI for all analysis. https://drive.google.com/open?id=1PtWgnxF67OJiglObypgAbAPXEiE8mMHq https://drive.google.com/file/d/1ncJh-m776lNSUwvVKRRum4zkSGd68-GC/view https://drive.google.com/open?id=1jX1hlD61rEk4rvoO1O8-f-neH769oU3Q https://drive.google.com/open?id=10EcPLicbmIiivELlbLrYBGviUSQXHs2g I...

Dear Nick, I have created a template using the templateCommand.sh script. For a trial I used 3 subjects and created template before and after skull strip. Please see the attached file and give your input. https://drive.google.com/open?id=1mtef9p7Gu4jA1Sy4g1OY8ovWoGhsOX07 https://drive.google.com/open?id=1KPjtkEPBQOyaZghp4Q4SOTrlPd6pm-1y Further I want to create tissue probability map for GM, WM and CSF by the samle template. Can I segment the template using fsl-fast segmentation tool? And finally...

Dear Nick, I downloaded example data and did analysis using the scritp in the folder. I have comapred with the result provided with the example folder. It is perfectly fine. Could you please help me to create template from my data? I want to select a particular image as initial template and feed into the command line. Please see the image details below and accordingly I want to modify the script/commandline. I am using dcm2nii for image conversion and fsl-bet for skull stripping. DICOM/IM_0004 Field...