Activity for Pascale Gaudet
-
Pascale Gaudet created ticket #435
Indels at protein level
-
Hi Ingrid, Yes I'd move it to the other tracker (well the new tracker - https://github.com/geneontology/go-ontology/issues...
-
PTN000186208 mapping to GO:0005663
-
Ingrid, I am surprised that you think the taxon constraints should have caught this,...
-
PTN000007197 mapping to GO:0043231
-
Hi Ingrid, I fixed the family. Next time can you give the the accession of the protein...
-
I think collapsing the process/function distinction here would be a good move. The...
-
Yes these definitions are good, thanks ! I agree the ATP/ADP-activated was confusing....
-
Hi David, Sorry I missed that you had renamed the terms: GO:0045031 ATP-activated...
-
Hi David, I dont understand the TPR then. If a protein is an ATP receptor, it's not...
-
OK, thanks !
-
Hi David, There is something odd in the tree: GO:0001609 G-protein coupled adenosine...
-
Hi Jim, Thanks for the caffeinated comments ! Maybe that was implied, but : One last...
-
Peter, Just so I am clear: are you saying there is no need to annotate manually to...
-
Question about F-P link from GO:0016532 superoxide dismutase copper chaperone activity
-
Question about F-P GO:0045031 (ATP-activated nucleotide receptor activity)
-
Hi Chris, I also agree that metabolic process is high level but of course everything...
-
Hi Chris, Having "any process that regulates the acidity of a lysosome lumen occurs...
-
Hi Chris, I am not sure I understand what your comments imply. One issue is that...
-
Incorrect inter-ontology link ?
-
Hi Val, David, The comment is useful, I'm in favor of adding something like that....
-
NTR intracellular G-protein coupled receptor activity
-
I agree. Col 16 materials.
-
Ah thanks ! I need to check the annotations then - is seems unlikely the same proteins...
-
MP GO:0004660 protein farnesyltransferase activity ?
-
Query on GO:0023014 signal transduction by phosphorylation
-
Missing parent ? protein ubiquitination involved in ubiquitin-dependent protein catabolic process
-
ok, thanks !
-
Missing parent ? protein ubiquitination involved in ubiquitin-dependent protein catabolic process
-
Missing parent ? protein ubiquitination involved in ubiquitin-dependent protein catabolic process
-
IPR006534 mapped to GO:0006200 obsolete ATP catabolic process
-
IPR006534 mapped to GO:0006200 obsolete ATP catabolic process
-
Parent GO:0000981 sequence-specific DNA binding RNA polymerase II transcription factor activity
-
Missing aprent S-methyl-5-thioadenosine phosphorylase activity?
-
(If there are no more comments, this issue can be closed. I'll leave it open for...
-
Hi Paul, Rama, I reviewed the annotations, trying to implement Paul's suggestions....
-
Hi Paul, According to http://dehydrogenase.co.uk/ I think these proteins are dehydrogenases...
-
... same for mitosis/mitotic nuclear division
-
GO:0007126 meiosis merged with meiotic nuclear division?
-
sure, but here you are talking about 'regulation of'. Shouldn't regulation be outise...
-
My understanding was that none of this was 'metabolism'. Or else all cellular processes...
-
GO:0000084 mitotic S phase
-
OK, thanks !
-
Hi Val, To be consistent with https://sourceforge.net/p/geneontology/ontology-requests/11253/...
-
GO:0000084 mitotic S phase
-
Ah ok, thanks! I think I have asked before. It always throws me off that we dont...
-
Parent GO:0000981 sequence-specific DNA binding RNA polymerase II transcription factor activity
-
PTN001593502 mapping to chromatin
-
PTHR000006656 and 6657
-
PANTHER:PTN000120057
-
Review PTHR11309
-
Fixed by Huaiyu Oct 31, 2014
-
PANTHER:PTN000120057
-
PTN001593502 mapping to chromatin
-
Hi Ingrid, Thanks for the feedback. I removed the annotations referring to chromatin...
-
Hello, I know I brought that up before - but just to be sure we're aware that the...
-
I agree with Val - this doesn't seem to be catabolism. Pascale
-
Good point Val ! I agree they should merge. My favorite term name is 'ubiquitinyl...
-
NADPH-adrenodoxin reductase activity - wrong EC link
-
PANTHER:PTN000156122 SERPIN ANNOTATION
-
Hi Helen, I am finally having a look at this one. Looks like you guys have made the...
-
mp GO:0006261 DNA-dependent DNA replication
-
GO:0004221 ubiquitin thiolesterase activity should be deleted, see http://sourceforge.net/p/geneontology/ontology-requests/11094/...
-
Hello Paul, Looking at the two papers (PMID_ 21855797, PMID_ 25215947), my opinion...
-
Hi David, I really do think these terms should be obsoleted, both cytochrome c and...
-
Hi David, I thought we had decided not to create x protein biosynthetic process....
-
I have fixed the offending family. I know we have other taxon constraints violations,...
-
Hi Karen, "Protein aggregate" sounds a like an artifact; if that solution is chosen,...
-
Val is right - the definition of "catabolic process" needs to be made narrower. Thanks,...
-
Hi Jim, This is a family that was curated a long time ago, before the taxon constraints...
-
Hi Chris, That sounds like a sensible solution. Thanks, Pascale
-
This is probably beyond my intellectual capacities...... but why is cell a cell component...
-
query lactation
-
Hi Paola, Thanks for looking into this. I still think the definition for axon development...
-
Thanks Paola, I didn't mean to link to 'regulation of appetite'; I meant to do the...
-
Ho Paola, That would work. The parents of'GO:0002023 reduction of food intake in...
-
Question: difference between axon development and axonogenesis
-
Is GO:0002023 reduction of food intake in response to dietary excess a phenotype ?
-
Hi Val, I think that's right, see also http://en.wikipedia.org/wiki/Telomere "During...
-
Hi David, That seems like a good solution - as far as I can tell, the type of proteins...
-
Should "protein peptidyl-prolyl isomerization" have some link to "protein folding" ?
-
... but I think those are repaired by the NER pathway... see http://en.wikipedia.org/wiki/Pyrimidine_dimer...
-
Hello, UV does not just cause one type of damage: " UV radiation induces a much wider...
-
OTR GO:0000160 phosphorelay signal transduction system
-
Hi David, I am not sure I am following what you are saying: I think GO:0004221 has...
-
Obsolete or merge 'ubiquitin thiolesterase activity'
-
OTR: oncostatin-M receptor complex
-
Yes, thanks !
-
Is "neutrophil mediated immunity" an "immune response" ?
-
OTR: oncostatin-M receptor complex
-
NTR: regulation of transcription involved in carbohydrate catabolism
-
Apelin is a gene product
-
Hi David, Thanks for the explanations. If that term should not be used for annotation,...
-
Hi David, That doesn't help clear the confusion - this just shows that MP is a process....
-
It still seems like a process to me. Why not just use "GO:0004871 signal transducer...
-
Is this a MF ? " GO:0005057 receptor signaling protein activity"?
-
Hello, According to wikipedia, Chemotropism can occur in single-celled organisms,...
-
Hi Val, Good point. However I propagated this because it was annotated across multiple...
-
Hi Ruth, I was talking about dimerization as a MF versus dimer as CC. I dont see...
-
OK, thanks !
1 >
