Priscilla Glenn

Hi, I recently read on biostars HERE that I could use your tools to determine the GC content of my reads. My reads are paired reads though and I wanted to adjust this to determine the GC content for each chromosome. I was able to manually split my bam file into the various chromosomes but am unsure how best to use reformat and stats on these files. When I tried to tell reformat that it was paired, and provide two output file names, it didn't work. It runs properly if I say they are unpaired but I'm...

Hi, I recently read on biostars [https://www.biostars.org/p/9546248/]HERE that I could use your tools to determine the GC content of my reads. My reads are paired reads though and I wanted to adjust this to determine the GC content for each chromosome. I was able to manually split my bam file into the various chromosomes but am unsure how best to use reformat and stats on these files. When I tried to tell reformat that it was paired, and provide two output file names, it didn't work. It runs properly...

Hi, I recently read on biostars [https://www.biostars.org/p/9546248/] that I could use your tools to determine the GC content of my reads. My reads are paired reads though and I wanted to adjust this to determine the GC content for each chromosome. I was able to manually split my bam file into the various chromosomes but am unsure how best to use reformat and stats on these files. When I tried to tell reformat that it was paired, and provide two output file names, it didn't work. It runs properly...

Hi, I recently read on biostars [https://www.biostars.org/p/9546248/]HERE that I could use your tools to determine the GC content of my reads. My reads are paired reads though and I wanted to adjust this to determine the GC content for each chromosome. I was able to manually split my bam file into the various chromosomes but am unsure how best to use reformat and stats on these files. When I tried to tell reformat that it was paired, and provide two output file names, it didn't work. It runs properly...