User Activity

  • Posted a comment on ticket #1 on KAnalyze

    Yes, your details are correct with a few caveats. Disk based: By default, KAnalyze fills a memory buffer (k-mer "segment"), sorts and counts it, then dumps it to disk. Then the memory buffer is cleared and the next set of k-mers are counted. Instead of dumping the buffer to disk, it can move it to another place in memory (Option --nodumpseg) and re-allocate the memory buffer. This mode is not recommended unless the machine has lots of memory to work with. In Java, this is also less efficient because...

  • Modified a blog post on KAnalyze

    KAnalyze 2.0.0 has been released!

  • Created a blog post on KAnalyze

    KAnalyze 2.0.0 has been released!

  • Committed [c27b31]

    Completed k-mer utility conversion and unit tes...

  • Committed [c45bb0]

    Merge branch 'stdio' into prefilter

  • Committed [562e93]

    Pre-1.0.0 build (NOT to be released!). Testing ...

  • Committed [91d0de]

    Merge branch 'dev' into prefilter

  • Committed [9afd8b]

    Filter code in place. Modules need code to run it.

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Personal Data

Username:
paudano
Joined:
2013-08-21 16:08:01
Location:
United States / EDT
Gender:
Male

Projects

This is a list of open source software projects that Peter Audano is associated with:

  • Project Logo KAnalyze DNA/RNA Sequence K-mer Toolkit Last Updated:

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