Activity for Nicola Vigano
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Nicola Vigano committed [a14978]
Python: allow different matlab paths on different machines
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Orientation sampling: reduce code duplication.
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Python: updated package descriptions
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Added generic image IO functions
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Python: more fixes for running recent versions
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Python stuff: fixed execution for recent Python versions
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GtBenchmarks: improved discovery of object sizes
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combined acquisitions can have multiple p.acq and detgeo fields
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Cleaning up gtOarSubmit a bit
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Updated gtBatch
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Refactored logviewOar into gtBatchLogView
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OAR submission: renamed submitOar and resubmitOar to fit into correct naming scheme
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Renamed OAR_make to gtOarLaunch
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Improved gtRenderGrains
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Up-sampling: added alternative up-sampling method
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Tweak to random grain generation
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Simplified passing of grain structure to reconstruction.
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Revert unintended part of "Orientation sampling: added ability to choose sampling axes/directions"
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fixed error introduced in previous commit
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Random deformation: next iteration of improvements
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Orientation sampling: added ability to choose sampling axes/directions
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Orientation space sampling: fixed topotomo sampling
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gtCalculateGrain: improved visualization of grain
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Grain show: moved gtCalculateGrain's show functionality to separate function
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cosmetic changes
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Minor fixes
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refactored difspot -> full function
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Improvements to the processing and visualization of theoretical data
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gtCalculateGrain / fwdproj: Correct and consistent use of diffractometer
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Algorithm factory: fixes to old style blobs and sample shifts
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test cases: quality of life improvements
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Formatting style
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More fixes to gtCalculateGrain
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Added parula colormap
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Voxel projectors: Added safety projectors
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Fixed random dmvol generation
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gtCalculateGrain: updated, and added warning when labgeo.rotdir differs from the rotation axis in diffractometer
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Test case: improved result visualization
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Minor fixes
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Fixed typo
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Test reconstruction: improved reconstruction and post-processing routines
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Fixed grains render for synthetic grains
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6D-reconstruction: some fixes, including DCT + Topotomo
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Minor renaming
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Synthetic test cases generation: improved current routines, and added new method
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Grain segmentation: added more verbosity if requested
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Synthetic grains projection fixes
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Added jet cmap
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Improved (raw and HST) volume reading
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Fixed some bugs with python 3
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Topotomo: Yet another import fix
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Topotomo: fixed a couple of small bugs
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function for importing tt scans
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Fixed a couple of file names
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Diffractometer: we now handle DCT's initial tilts/shifts
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Small fixes and clarifications (mostly acq)
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fixed small bugs
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pixel ospace visualization, fixed bug
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6D - Test cases: improved result GUI
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Figures: improved figure creation functions
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Improved grain reconstruction visualization
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Improved synthetic-data reconstruction analysis
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GtThreshold: allowed parameters passing directly to constructor
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Synthetic grain: allow original data to have different spatial resolution
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Added single orientation sampling to 6D code, and to test reconstruction
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More improvements to simulated-data reconstruction analysis
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GUI Layout (for matlab 2014b and newer): updated from v2.2.1 to v2.3.1 (and disabled tracking, which would take forever behind a proxy)
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Gracefully handle new fwd-sim parameter
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removed useless line in test case recosntruction
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Fixed matlab's eps figures (color)
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Fixed multi-detector bug in gtCalculateGrain
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6D-reconstruction: fixed volume size in volume_downscaling reconstructions
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Fixed left-over from previous commit
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GtOrientationSampling: fixed returning super-sampling data structure
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Fixed the det_ind and pl_ind issue in gtRecontructGrainOrientation and GtOrientationSampling
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Fixed variables order for allblobs
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Topotomo import: updated parameters import function
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gtSaveParameters: adapted to multi-acquisition parameters
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Topotomo import: added simple background removal and projection geometry construction for 3D reconstruction/projection
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Formatting and commenting
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Enabling of multi-detector / multi-mode for single-grain real-data reconstructions
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Orientation sampling: let it use acq.pl_ind instead of manually passing it
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topotomo import: fixed permutation of images
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Small fix
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Fixed bugs related to some previous changes with the diffractometer and orientation sampling
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4x4 rotation/translation tensors: fixed freevec
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gtCalculateGrain: use sample shifts in grain center calculation for topotomo
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Topotomo importing: initial function that creates the grain.proj structure
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Topotomo import: fixes to previous commit
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phistep: changed definiton
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gtCalculateGrain: updated to support one diffractometer per acquisition
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Toptomo: added parameters import function
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Geo: apply sam.orig for 4x4 tensors as well
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Acq-parameters: added motor positions
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Diffractometer: adding sample translations on top of the sample tilts
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Added fallback for missing license (imaging toolbox)
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FwdProj: reformatted a bit
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Fixed a couple of bug with the latest changes in the grain structure
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GtOrientationResultView: auto title detection
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6D-Reconstruction: fixed l1-min
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