fixed bug in reg_tools by removing unwanted ==0 when testing if a number or file name has been provided
Merge branch '27-bugs-in-reg_tools-and-reg_transform' of cmiclab.cs.ucl.ac.uk:mmodat/niftyreg into 27-bugs-in-reg_tools-and-reg_transform
Merge branch '27-bugs-in-reg_tools-and-reg_transform' into 'master'
Merge branch '30-update-cli-flags' into 'master'
Issue #25: Removed the discrete related code for now.
Merge branch '25-cleaning-discrete-code' into 'master'
Issue #24: Wrong index was checked in reg_average\nCaused to fail when only one image or matrix was being averaged
Merge branch '24-reg_average-fails-with-one-input' into 'master'
Removed pngtest.c from the png source. Thanks Floris B.
Adding a unit test for spline composition
Issue #20: Force SSE3 to be used for non MSVC
Issue #19: Error in a block matching variable accumulation with openmp
Merge branch '19-reg_test_coherence_blockmatching-error' into 'master'
Modified the matlab cmake interaction
Merge branch 'update-cmake-matlab-windows'
Issue #18: Fix the SSD unit tests and removed a few warnings
Issue #16: Initial implementation. Only works for SSD - forward
Issue #16: change the help message
Merge branch '16-local_weighting_sim'
Merge branch '18-reg_test_measure_ssd_-d-unit-tests-fail' into 'master'
Issue #17: Removed the omp flag when specified through a file, for nipype interface
Merge branch '17-reg_average-needs-omp-flag-for-nipype-interface' into 'master'
Removed the unrequired NiftyRegSetEnvUnix.sh file
Irrelevenat changes to test sync. Try number 5
Irrelevenat changes to test sync. Try number 3
Irrelevenat changes to test sync. Try number 4
Irrelevenat changes to test sync. Try number 1
Irrelevenat changes to test sync. Try number 2
Merge branch '13-reg_f3d-crash-with-long-inputs' into 'master'
Fixing windows related error
Merge branch 'b3-unit_test_errors' into 'dev'
b#3: Modified the gradient test to use the spline interpolation as it is equivalent to symmetric difference when an identity transformation
b#3: removed the coherence mrf test
Merge branch 'dev' into 'master'
Issue #12: Landmark based regularisation. Measure and gradient.
Merge branch '10-dense_le' into 'master'
Leak in reg_average
Removed a few warnings and modified the spline deformation field test
Added unit tests for the linear elasticity and added dense implementation from spline and deformation field
Error when setting a library dependency for reg_test_measure
Issue #6: Modified f3d2 to enable to non optimise specified axis
#5: Modified reg_average to accept a file as argument.
Merge branch '4-unit-test-data-generation' into 'master'
Added look up table for spline
Removed a few warning due to empty function
Merge branch '6-f3d2-blocked-axis-error' into 'master'
Merge branch 'master' into '4-unit-test-data-generation'
Merge branch '8-lut_spline' into 'master'
Error in debug and jac det vel computation fixed
Merge branch '5-reg_average_file_input' into 'master'
Minor modifications of the cmakelists.txt file to correct a few errors
Unit tests for approx and dense linear elasticity value and gradient implemented
Merge branch '14-reg_maths_eigen-check-matrix-invertible-before-log' into 'master'
enable to copy the test data without matlab installed
Error when using input images with nifti extensions and the stationary velocity field
Merge branch 'sim_and_timepoint_weights'
Issue #8: Added unit tests for the BSpline deformation field
Modified the size of the buffer in aladin and f3d to allow for longer command line
Modified the downsampling to use NN interpolation
SSD test was missing the normalisation step
Error in help when compiled without openmp
Create a hook stored on the repo for set the bu...
checkout my versioning hook
Adding build versioning using git
Corrected the average image normalisation
Modified the reg_average behaviour to remove nan
Error in the aladin destructor when no registra...
modified reg_resample to deal with 5D images
Removed a few warnings
Merge branch 'dev' of ssh://git.code.sf.net/p/n...
modified the CL context to force the use of a G...
Remove build error. Modified reg_f3d help. Corr...
discrete_init - mrf optimization integration
modify the unit tests
removed a few warnings due to sprintf identical...
Modified the openmp pre and post dpi processing...
Modified the logm of mat33 to be robust to NaN ...
Revert "NiftyReg MRF implementation"
OpenMP version of the GetDiscretisedValueSSD_co...
Merge branch 'discrete_init_fix' into dev
Modification to enable the use of linear spline...
Adding functions to enable a linear parametrisa...
Modified the computation of the regularisation ...
modified the boundary coundition by using neare...
Hi, Would you be able to show me the content of your param file? Regards, Marc On...
Hi, Some of the temporary files created during the process are send directly to /dev/null...
Altered cmake to ease the use as external lib
Change the gradient computation for each measure
Dev feature integration (reg_discrete_init)
Merge branch 'dev' of ssh://git.code.sf.net/p/n...
Removed the multichannel_nmi from f3d.
Modified the doxy configuration file to remove ...
Merge branch 'doxygen_improvements' into dev
Modified the doxygen configuration to account f...
Merge branch 'f8-mind_integration' into dev
f#8: Modified the discrete ssd by adding paddin...
Merge branch 'f8-mind_integration' of ssh://git...
f#8: various modification to add the discrete_i...