Activity for Marc Modat

  • Marc Modat Marc Modat committed [f0d93c]

    fixed bug in reg_tools by removing unwanted ==0 when testing if a number or file name has been provided

  • Marc Modat Marc Modat committed [b769b5]

    Merge branch '27-bugs-in-reg_tools-and-reg_transform' of cmiclab.cs.ucl.ac.uk:mmodat/niftyreg into 27-bugs-in-reg_tools-and-reg_transform

  • Marc Modat Marc Modat committed [62af1c]

    Merge branch '27-bugs-in-reg_tools-and-reg_transform' into 'master'

  • Marc Modat Marc Modat committed [810a02]

    Merge branch '30-update-cli-flags' into 'master'

  • Marc Modat Marc Modat committed [56916c]

    Issue #25: Removed the discrete related code for now.

  • Marc Modat Marc Modat committed [26ac2c]

    Merge branch '25-cleaning-discrete-code' into 'master'

  • Marc Modat Marc Modat committed [1b8bc2]

    Issue #24: Wrong index was checked in reg_average\nCaused to fail when only one image or matrix was being averaged

  • Marc Modat Marc Modat committed [a809ca]

    Merge branch '24-reg_average-fails-with-one-input' into 'master'

  • Marc Modat Marc Modat committed [88b369]

    Removed pngtest.c from the png source. Thanks Floris B.

  • Marc Modat Marc Modat committed [d76af9]

    Adding a unit test for spline composition

  • Marc Modat Marc Modat committed [91059d]

    Issue #20: Force SSE3 to be used for non MSVC

  • Marc Modat Marc Modat committed [58d3b4]

    Issue #19: Error in a block matching variable accumulation with openmp

  • Marc Modat Marc Modat committed [1d4259]

    Merge branch '19-reg_test_coherence_blockmatching-error' into 'master'

  • Marc Modat Marc Modat committed [bea76a]

    Modified the matlab cmake interaction

  • Marc Modat Marc Modat committed [05e829]

    Merge branch 'update-cmake-matlab-windows'

  • Marc Modat Marc Modat committed [b58b61]

    Issue #18: Fix the SSD unit tests and removed a few warnings

  • Marc Modat Marc Modat committed [902b17]

    Issue #16: Initial implementation. Only works for SSD - forward

  • Marc Modat Marc Modat committed [78e427]

    Issue #16: change the help message

  • Marc Modat Marc Modat committed [17d332]

    Merge branch '16-local_weighting_sim'

  • Marc Modat Marc Modat committed [717a2c]

    Merge branch '18-reg_test_measure_ssd_-d-unit-tests-fail' into 'master'

  • Marc Modat Marc Modat committed [a7671e]

    Issue #17: Removed the omp flag when specified through a file, for nipype interface

  • Marc Modat Marc Modat committed [463084]

    Merge branch '17-reg_average-needs-omp-flag-for-nipype-interface' into 'master'

  • Marc Modat Marc Modat committed [e01670]

    Removed the unrequired NiftyRegSetEnvUnix.sh file

  • Marc Modat Marc Modat committed [fc3f83]

    Irrelevenat changes to test sync. Try number 5

  • Marc Modat Marc Modat committed [284ac6]

    Irrelevenat changes to test sync. Try number 3

  • Marc Modat Marc Modat committed [709018]

    Irrelevenat changes to test sync. Try number 4

  • Marc Modat Marc Modat committed [df654c]

    Irrelevenat changes to test sync. Try number 1

  • Marc Modat Marc Modat committed [dee2bf]

    Irrelevenat changes to test sync. Try number 2

  • Marc Modat Marc Modat committed [c289b3]

    Merge branch '13-reg_f3d-crash-with-long-inputs' into 'master'

  • Marc Modat Marc Modat committed [cf93c3]

    Fixing windows related error

  • Marc Modat Marc Modat committed [6b7d64]

    Merge branch 'b3-unit_test_errors' into 'dev'

  • Marc Modat Marc Modat committed [c3395d]

    b#3: Modified the gradient test to use the spline interpolation as it is equivalent to symmetric difference when an identity transformation

  • Marc Modat Marc Modat committed [6e0364]

    b#3: removed the coherence mrf test

  • Marc Modat Marc Modat committed [b58231]

    Merge branch 'dev' into 'master'

  • Marc Modat Marc Modat committed [38e313]

    Issue #12: Landmark based regularisation. Measure and gradient.

  • Marc Modat Marc Modat committed [851baa]

    Merge branch '10-dense_le' into 'master'

  • Marc Modat Marc Modat committed [fc526c]

    Leak in reg_average

  • Marc Modat Marc Modat committed [8e622a]

    Removed a few warnings and modified the spline deformation field test

  • Marc Modat Marc Modat committed [743abb]

    Added unit tests for the linear elasticity and added dense implementation from spline and deformation field

  • Marc Modat Marc Modat committed [2159c1]

    Error when setting a library dependency for reg_test_measure

  • Marc Modat Marc Modat committed [849bec]

    Issue #6: Modified f3d2 to enable to non optimise specified axis

  • Marc Modat Marc Modat committed [f296f0]

    #5: Modified reg_average to accept a file as argument.

  • Marc Modat Marc Modat committed [13ec16]

    Merge branch '4-unit-test-data-generation' into 'master'

  • Marc Modat Marc Modat committed [a4ac30]

    Added look up table for spline

  • Marc Modat Marc Modat committed [fc205d]

    Removed a few warning due to empty function

  • Marc Modat Marc Modat committed [039ce0]

    Merge branch '6-f3d2-blocked-axis-error' into 'master'

  • Marc Modat Marc Modat committed [469aeb]

    Merge branch 'master' into '4-unit-test-data-generation'

  • Marc Modat Marc Modat committed [3c95c5]

    Merge branch '8-lut_spline' into 'master'

  • Marc Modat Marc Modat committed [62de17]

    Error in debug and jac det vel computation fixed

  • Marc Modat Marc Modat committed [28e946]

    Merge branch '5-reg_average_file_input' into 'master'

  • Marc Modat Marc Modat committed [154029]

    Minor modifications of the cmakelists.txt file to correct a few errors

  • Marc Modat Marc Modat committed [48e284]

    Unit tests for approx and dense linear elasticity value and gradient implemented

  • Marc Modat Marc Modat committed [7e5450]

    Merge branch '14-reg_maths_eigen-check-matrix-invertible-before-log' into 'master'

  • Marc Modat Marc Modat committed [de249a]

    enable to copy the test data without matlab installed

  • Marc Modat Marc Modat committed [5bd12c]

    Error when using input images with nifti extensions and the stationary velocity field

  • Marc Modat Marc Modat committed [5a6041]

    Merge branch 'sim_and_timepoint_weights'

  • Marc Modat Marc Modat committed [c17975]

    Issue #8: Added unit tests for the BSpline deformation field

  • Marc Modat Marc Modat committed [25135b]

    Modified the size of the buffer in aladin and f3d to allow for longer command line

  • Marc Modat Marc Modat committed [cab911]

    Modified the downsampling to use NN interpolation

  • Marc Modat Marc Modat committed [0ac695]

    SSD test was missing the normalisation step

  • Marc Modat Marc Modat committed [d9c660]

    Error in help when compiled without openmp

  • Marc Modat Marc Modat committed [f0ab80]

    Create a hook stored on the repo for set the bu...

  • Marc Modat Marc Modat committed [e15895]

    checkout my versioning hook

  • Marc Modat Marc Modat committed [691e3e]

    Adding build versioning using git

  • Marc Modat Marc Modat committed [d4578c]

    Corrected the average image normalisation

  • Marc Modat Marc Modat committed [3823db]

    Modified the reg_average behaviour to remove nan

  • Marc Modat Marc Modat committed [9e0e04]

    Error in the aladin destructor when no registra...

  • Marc Modat Marc Modat committed [1dbc86]

    modified reg_resample to deal with 5D images

  • Marc Modat Marc Modat committed [fb10e7]

    Removed a few warnings

  • Marc Modat Marc Modat committed [e175a1]

    Merge branch 'dev' of ssh://git.code.sf.net/p/n...

  • Marc Modat Marc Modat committed [4820e4]

    modified the CL context to force the use of a G...

  • Marc Modat Marc Modat committed [02dc53]

    Remove build error. Modified reg_f3d help. Corr...

  • Marc Modat Marc Modat committed [659568]

    discrete_init - mrf optimization integration

  • Marc Modat Marc Modat committed [454d29]

    modify the unit tests

  • Marc Modat Marc Modat committed [4ea9a7]

    removed a few warnings due to sprintf identical...

  • Marc Modat Marc Modat committed [8bc654]

    Modified the openmp pre and post dpi processing...

  • Marc Modat Marc Modat committed [c9e37a]

    Modified the logm of mat33 to be robust to NaN ...

  • Marc Modat Marc Modat committed [2d6b28]

    Revert "NiftyReg MRF implementation"

  • Marc Modat Marc Modat committed [527d76]

    OpenMP version of the GetDiscretisedValueSSD_co...

  • Marc Modat Marc Modat modified ticket #8

    mind integration

  • Marc Modat Marc Modat committed [b68c4c]

    Merge branch 'discrete_init_fix' into dev

  • Marc Modat Marc Modat committed [5ebe51]

    Modification to enable the use of linear spline...

  • Marc Modat Marc Modat committed [7d59e6]

    Adding functions to enable a linear parametrisa...

  • Marc Modat Marc Modat committed [24f49c]

    Modified the computation of the regularisation ...

  • Marc Modat Marc Modat committed [3759a3]

    modified the boundary coundition by using neare...

  • Marc Modat Marc Modat posted a comment on discussion Help

    Hi, Would you be able to show me the content of your param file? Regards, Marc On...

  • Marc Modat Marc Modat posted a comment on discussion Help

    Hi, Some of the temporary files created during the process are send directly to /dev/null...

  • Marc Modat Marc Modat committed [9ce216]

    Altered cmake to ease the use as external lib

  • Marc Modat Marc Modat committed [4b53d0]

    Change the gradient computation for each measure

  • Marc Modat Marc Modat committed [f4e3a2]

    Dev feature integration (reg_discrete_init)

  • Marc Modat Marc Modat committed [e0baf0]

    Merge branch 'dev' of ssh://git.code.sf.net/p/n...

  • Marc Modat Marc Modat committed [251332]

    Removed the multichannel_nmi from f3d.

  • Marc Modat Marc Modat committed [8762ce]

    Modified the doxy configuration file to remove ...

  • Marc Modat Marc Modat committed [ce96e2]

    Merge branch 'doxygen_improvements' into dev

  • Marc Modat Marc Modat committed [63d987]

    Modified the doxygen configuration to account f...

  • Marc Modat Marc Modat committed [94fcb6]

    Merge branch 'f8-mind_integration' into dev

  • Marc Modat Marc Modat committed [171993]

    f#8: Modified the discrete ssd by adding paddin...

  • Marc Modat Marc Modat committed [f39e49]

    Merge branch 'f8-mind_integration' of ssh://git...

  • Marc Modat Marc Modat committed [f78ef5]

    f#8: various modification to add the discrete_i...

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