nudge search engines into indexing the current website instead of this one.
update decommissioning announcement styling and date.
Write EOL outside while loop when inserting timestamp into downloaded files.
Reworked HtmlEncodingFilter because HttpServletRequest is immutable.
More XSS-related fixes.
Make getHTMLEncodedParameter actually encode parameters.
avoid path traversal attacks when requesting static pages.
Avoid XSS attacks on the search page.
fix javadoc typo
Rephrased link to JUMMP in light of the retirement date for this website.
Updated submission link since JUMMP has moved to wwww.
Links to JUMMP should use https://
Remove beta from link to JUMMP
Fix logo src on Caltech homepage.
More GDPR-related changes.
Updated the cookie banner to include the GDPR privacy notice.
Avoid XSS vulnerability when downloading models.
Allow search requests to terminate after interruptions.
Interrupt search threads running longer than 2 seconds.
Close Lucene analyser even if a search throws an exception.
Deal with empty email addresses when recording model creators.
Avoid NPE if logical operator for advanced search is not provided.
Fix stale groupId for registry-lib in pom.xml
Add Maven integration.
Ignore Maven and IntelliJ artefacts.
fixed type casting error when converting comp submodels to biopax
Fixed database connection leak in healthcheck servlet.
Handle potential NPEs when dealing with PDGSMM search results.
Improved reporting of search query execution time.
Ensure search workers are stopped even in case of exceptions:
Return after handling a PDGSMM file download request.
Use try-with-resources to ensure GoDao db connections get closed.
Use a dedicated shared lock for acquiring db connections.
use HTTPS on main homepage.
Use protocol-relative URIs for GO chart dependencies.
Redirect submissions to JUMMP
added link to BioModels Jummp
Switched to HTTPS for Europe PMC and ChEBI endpoints
fixed https icon for expanding PDGSMM search tips
Use identifiers.org URI for BioModels citation.
Updated citation used by the model notes editor.
Usability enhancements to the browse PDGSM models page.
minor pdgsmm search enhancements.
added PDGSM models to global BioModels search results.
Added missing link to PDGSMM to the front page navbar.
Improved error handling when not possible to fetch a db connection.
streamlined PDGSMM search as a means of refining browsing by disease.
Added PDGSMM link to nav bar.
Added PDGSMM-specific search.
Updated logo for MoM RSS feed.
display annotations for pdgsmm models.
Minor wording improvements for PDGSMM pages
Added PDGSMM disease archive links.
updated database schema to include the pdgsm_models table.
Dropped gender & age from browse PDGSMM by disease table.
Minor improvements to browse PDGSMM page:
Added means of browsing PDGSM models by disease type.
Committing servlet for downloading model files.
added license information to recently-created pdgsmm source files.
Added publication link and missing classes for ModelMonth entry for pdgsmm.
Return null instead of throwing an exception for null ModelMonth arguments.
removed unnecessary semicolon.
Refined styling for buttons on PDGSM model display page.
Fixed download for patient-derived genome scale metabolic models.
Added basic means of viewing a patient-derived genome scale metabolic models.
minor javadoc fixes.
Added SBML L2V5 to accepted formats.
added AgedBrain acknowledgements.
Updated JSBML.
Fixed javadoc for SBMLUtilities.generateNoAnno argument.
fixed Ant script for Java 8.
increased min pagination size
Added Plant Ontology and BioAssay Ontology to t...
fixed typo in LibSBMLFacade error message.
cleaned up extraneous log statements in gpcr se...
catch potential exceptions when closing result ...
Added back-end for displaying models relating t...
Added links to metabolic and logical models in ...
Simplified test for compartment types in ModelB...
updated version of jsbml.
don't assume the model history will always cont...
minor improvements to error logging when batch-...
updated message for ND map.
Updated image caption on ND map page.
Updated sections covering annotation/publication.
general updates to the introduction.
refreshed interaction with IOF and updated requ...
JUM-96 line wrapping, README in markdown, gener...
completed overhaul of tech overview.
extended coverage of technical overview.
added favicon.
Improved defence against awkward annotations.
remove broken mime type for jsp to allow diff'ing.
Added the neurodegenerative disease map page.
Cater for undefined publication volume in Europ...
fixed css typo.
Added info-box styling to submission guidelines...
fixup: java cannot switch on Strings.
semicolons...
Allow PDF as additional file type.