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  • Posted a comment on discussion Help on PyDSTool

    The source of this error comes from the definition of del in baseclasses.py. See this statement: for fname, finfo in self._funcreg.items(): try: delattr(eval(finfo[0]), fname) If you look at the structure of finfo (e.g. by inserting a print statement), it's a tuple. For some entries, finfo[0] is 'self', but in other cases its an empty string (I've noticed this is the case for some of the auxiliary functions). Try running eval('') in a Python interpreter and you'll get this exact error. You can bypass...

  • Posted a comment on discussion Open Discussion on PyDSTool

    Hi there! I just started using PyDSTool recently with the hopes of using it to replace a scipy implementation of an ecosystem model. It's a predator-prey like model, and I'm typically modeling about 12 species at a time. However, it seems that to use the faster Dopri/Radau integrators, one can only have up to 4 compartments total. Vode is quite slow compared to my original implementation that uses scipy.integrate.ode: PyDSTool will take around 50 seconds while scipy will take about 15. So it's unusable...

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mayerzine
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2017-09-14 00:33:38

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