Maria Cortazar Chinarro

Please, does anyone have tried "create-genewise-sync.pl" command in order to do the annotation on a gtf file? Otherwise how do you do the annotation. This is a pity because I cannot finish the pipeline if this is not working properly. I really appreciate if you could help me, Kind regards, Maria//

Problems with create-genewise-sync.pl

Hi, I am currently having the same error when I am running the script, the following line is not valid at /sw/apps/bioinfo/popoolation2/1201/rackham/create-genewise-sync.pl line 232, <$ifh> line 360233. Parsing gtf file.. Anyone knows how I can solve the problem?

Hi, I am currently having the same error when I am running the script, the following line is not valid at /sw/apps/bioinfo/popoolation2/1201/rackham/create-genewise-sync.pl line 232, <$ifh> line 360233. Parsing gtf file.. Anyone knows how I can solve the proble?

Please, can you upload the igv png images to check whether my results look ok? I cannot acces to thouse pictures: "Voila, the result should look something like this: Note that the result shown above only contain the Fst for a single pairwise comparison (pop1 vs pop2). PoPoolation2 is per default calculating the Fst for all possible pairwise comparisons between populations (when several populations are present in the synchronized file), and these results may just as easily be converted into the .igv...

Please, can you upload the igv png images to check whether my results looks ok? I cannot acces to thouse pictures: "Voila, the result should look something like this: Note that the result shown above only contain the Fst for a single pairwise comparison (pop1 vs pop2). PoPoolation2 is per default calculating the Fst for all possible pairwise comparisons between populations (when several populations are present in the synchronized file), and these results may just as easily be converted into the .igv...