mariem HAMZAOUI

Hello, I am sending the V02_to_V01_Warped.nii.gz and the V02_to_V01_Using_trans.nii.gz in the link. https://drive.google.com/open?id=18ayG9b6DeF8Ui76uf9tKlcqn85x7OYp6

Hello, Thank you for your response so I did what you told me antsRegistration --verbose 1 --dimensionality 3 --float 1 --collapse-output-transforms 1 -o [V02_to_V01_,V02_to_V01_Warped.nii.gz,V02_to_V01_InverseWarped.nii.gz] --initial-fixed-transform V01_transform2.txt --initial-fixed-transform V01_transform1.mat --initial-moving-transform V02_transform3_0Warp.nii.gz --initial-moving-transform V02_transform2.txt --initial-moving-transform V02_transform1.mat -t SyN[ 0.5,3,0 ] --interpolation BSpline...

Hello, I read in the antsRegistration help that I can do the registration while providing the transformation files for the fixed and the moving image using the --initial-fixed-transform & --initial-moving-transform flags instead of applying the transformation and registring the transformed volumes. This is my command: antsRegistration --verbose 1 --dimensionality 3 --float 1 --collapse-output-transforms 1 -o [V02_to_V01_,V02_to_V01_Warped.nii.gz,V02_to_V01_InverseWarped.nii.gz] --initial-fixed-transform...