Mahul Chakraborty

Thanks for the suggestion, Sergey. Yes, this happened during the correction stage.....

Assertion `bof->bufferPos <= bof->bufferLen' failed

The pipeline went to completion :) So it seems memory usage was the issue. Interesting....

quick update: setting batch size as 25000 seems to have fixed the issue. will keep...

Hi Brian, Thanks for the pointers. Our nodes have 256-512g RAM and these jobs were...

It's interesting that the pipeline has gone past the 3- overlapcorrection stage for...

Hi Brian, setting frgCorrBatchSize=75000 or 150000 did not work. Here is the link...

Hi Brian, Ahh. I see. I can certainly share the data with you. Do you want the fastq...