Activity for Galena Alyson Canada
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Galena Alyson Canada committed [bc7cdf]
typos and clarifications
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review, cosmetics
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Imports updated: tests can be run.
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Closed branch default-development
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Closed branch refactoring
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rxnconCompiler releasing script updates. Releas...
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Added tag rxnconCompiler-1.0.0 for changeset 22...
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mapk works in BioNetGen. Wornings added for con...
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Bug in applying complexes fixed - the same comp...
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finding bug in runing bionetgen in progress.
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flexible_reactions merge to biology
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comments added.
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new branch for adding flexible reactions in rxncon
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Tests for flexible reactions added.
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missing reactions are added now if run_process(...
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Warnings in bngl moved to RxnconWarnings. Tests...
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double domains removed from species
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Test data added.
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Work on molecules and species section in progre...
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Asoc exchanged with Assoc
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domain fixed exchanged old bd in get_dsr with N...
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work in progress on domain names
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unused files removed
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rxnconCompiler pluged to defoult rxncon/rulebas...
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rxnconCompiler release 0.2.6
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code in rulbased.py exchange with conection to ...
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default_biology branch for integration biology ...
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Added tag release 0.2.5 of rxnconCompiler for c...
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interface and test for rxnconCompiler added to ...
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requirements and test_requirements restored.
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In progress: updating releases of rxnconCompiler.
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Big cleaning, updating tests and documentation.
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get_domain_try changed to get_domain
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All MAPK reactions pass.
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221 reactions works. Problem with the lst react...
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work in progress. resolving difficoult reactions.
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Fixed: which domain needs to be taken for homod...
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Closed branch with hanging domains naming - the...
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Closed branch experimenting with releases with ...
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work in progress
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bug for applying multiple k- fixed. Molecule me...
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Domain name for asocciations changed: Asoc + pa...
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Moving test data for separate directiry. Adding...
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PRODUCE and CONSUME added, basic reaction types...
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ipi works. Domein can be used only onece in one...
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Closed branch PBN (Probabilistic BooleaN)
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190 rules work.
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Added tag web-release_pbn for changeset 6f9d6a4...
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DefaultSaving merged - Basti fixes ER and AF.
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insert instead of append in ajax fixes graphs (...
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Test from Basti with K+ and ! modification added.
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PBN merged to default.
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work on ipi in progress
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Button for PBN added: calling PBN for xls files.
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Test data with peromon pathway added - prepared...
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documentation
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default branch reverted to revision 581 - the o...
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close interaction branch
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close branch architecture
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Close branch layout_saving
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short description of branch added
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close homodimerisation branch
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Branch description added.
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close website branch
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Two reactions added to tests.
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Applying relocalisation contingencies fixed (wh...
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rxnconCompiler-0.2.4 release
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Relocalisation reaction and contingency added. ...
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Release 0.2.3. Release data updated, init added...
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rules_mapk_data divided based on reaction type....
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release data updated.
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Dagrading one molecule from complex works.
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Rates ids work (They don't necessarily need to ...
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Issue with reaction ids while adding reaction t...
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Bug in ppi fixed. Attribut is_reactant added to...
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100 MAPK reactions pass in the rule acceptance ...
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automated releases updated - for the release v0...
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Functions for input added for both bool and nor...
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Bug when applying association contingency on LR...
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All input functions in rates pass. Small fix fo...
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Tests for input contingencies added. test_mapk_...
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Modul dealing with rates added. Rates are going...
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Work on rates in progress.
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Tests and test data added and updated.
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51 reactions in MAPK work and, tests updated.
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get_modifier method added (method of Reaction a...
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Release making updated with new files and changes.
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New system for mapk acceptance tests added. All...
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More MAPK tests updated.
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Comments added.
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50 reactions work.
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44 reactions work. Solved: Hog1_[PBD-2]_ppi_Pbs...
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Fixing K+/K- for contingencies containing input...
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domain naming changed. DomainFactory added - do...
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Cleaning.
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Domain name for modification contingencies upda...
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Modification of homodimer works.
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Work on non-boolean-contingency application in ...
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work in progress: adding ids to molecules, clea...
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compiler_release.py automaticaly prepares distr...
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