Added tag v0.9.2 for changeset f82b34189f36
fix a thread problem that can happen when the p...
added log messages
fixed thread race condition and added log4j
updated readme
change log messages to debug level
added debug option, change log messages to debu...
Added tag v0.9.1 for changeset 37776e10743f
removed unnecessary print
added the --version option
use array index instead of beginning of strings...
readme update
added the percentage of reads in dimers in outp...
numbers in output written with english standards
updated readme
better option management when only counting dimers
Added tag v0.9 for changeset 5752e8a6dd42
added option consitency check, a log file, and ...
adapted readme width
added readme and copyright files
filled the readme
removed debug comments
improved option comments and changed remove opt...
added the jar to the repo
added commented code to search all the read
test fingerprint
better options comments
added options for read and adapter shifting
added SR mode
test
added SR mode
init