File	Date	Author	Commit
R	2017-03-28	Michael Gooch	[94790c] mistake in the way the values were being suppli...
.gitignore	2017-03-27	Michael Gooch	[29503e] Implemented Raw String Literal inclusion for r ...
CMakeLists.txt	2017-03-27	Michael Gooch	[29503e] Implemented Raw String Literal inclusion for r ...
Makefile	2017-03-27	Michael Gooch	[a33ea6] makefile issue, lowercase name was still in repo
Makefile.manual	2017-03-27	Michael Gooch	[29503e] Implemented Raw String Literal inclusion for r ...
README	2017-03-25	Michael Gooch	[95090f] Added mention of cmake to the readme file
R_codes.h	2017-03-28	Michael Gooch	[94790c] mistake in the way the values were being suppli...
kseq.h	2016-12-06	mtruglio	[7275ba] Several bugfixes
main.cpp	2017-03-28	Michael Gooch	[5f62af] extra newlines snuck into my file after lengths...
main_win.cpp	2017-03-28	Michael Gooch	[5f62af] extra newlines snuck into my file after lengths...

Read Me

SolexaQA++ requires Boost libraries (http://www.boost.org/) and the Zlib library (www.zlib.net, usually installed by default on most Unix systems) in orderto be compiled.

To compile SolexaQA++, just run:

make -f Makefile.manual

or use cmake to generate a Makefile and then run make

In case the boost or zlib libraries are not found, please edit the BOOST_PATH and ZLIB path in the makefile (lines 4,5 for Windows; line 21 for Linux; line 35 for Mac).
In Windows, it could also be necessary to edit the boost version number in line 9 (I used v.1_55)