Activity for Kim Rutherford
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Kim Rutherford posted a comment on ticket #703
I think there was another ticket about this at some point because I remember fixing...
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Done? Possibly, but I haven't actually changed any of the instructions about what...
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We now have an "Advanced" mode. We could add a list of genes on the side quite easily...
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Check for missing annotation extensions
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Yep, that isn't a problem anymore because the workflow has changed.
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There was a "download annotation" link in the past but I've managed to lose it in...
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QC: Check for missing evidence before allowing submission
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Strange edit behavour for term suggestion name and comment fields
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Fixed - completely my mistake. It just happened to work OK in Firefox. https://g...
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Yep, but it's super low priority.
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We wanted to allow the admins to change the curator of an annotation. Mostly for...
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only seeing one of 8 annotation
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That code is completely re-written so I'll close the ticket.
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Yep, that page is completely gone.
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Remove the transfer annotation page
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We still have an annotation transfer page and I'd still like to remove it. We still...
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Strange edit behavour for term suggestion name and comment fields
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Thanks, that's clear. I think I've got it now but I'd appreciate a quick chat to...
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AI: Kim will talk to the various Pauls and ask what the backup plan is for other...
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The "Advanced" mode setting is now saved so if it's changed it sticks. I've move...
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Move "Admin" link to a menu and have an "advanced" mode
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Thanks for the fixes. How do I get updated screenshots into github? So far, I've...
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Update Canto docs and screenshots for multi-allele stuff
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I've moved the admin link to a menu (with a gear icon) and added an "advanced" mode...
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The empty tables are now hidden. We still need to do: https://sourceforge.net/p/pombase/curation-tool/899/...
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Hide headers of empty tables
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Move "Admin" link to a menu and have an "advanced" mode
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I've moved the "Add ..." links to be "Quick add ..." links on the gene and genotype...
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Multi allele phenotypes appear in the wrong table from "Add..."
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Move "Admin" link to a menu
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Update Canto docs and screenshots for multi-allele stuff
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Sorry, I meant to say: only fixed in the test tool for now.
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Fixed. The same changes will make it easy to move the "Add..." link and fix this:...
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simplify changing expression for an allele in a genotype
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OK, thanks. In that case I'll put it on priority 6, which can be for things that...
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multi-allele: try new code on Internet Explorer
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Fixed the annotation table bug in https://github.com/pombase/canto/commit/7180d63dd87d4418d4297504ce2527cd0b05478a...
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I've tried the new version of Canto in IE 9 (old version) and IE 11 (current version)...
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Do you think editing the expression level is something we need before releasing to...
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Fix existing phenotype annotation display
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Fixed by: https://github.com/pombase/canto/commit/daf0911de9782678a7f62c4d65e7032d40b1c8ed...
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The remaining problems have their own tickets now.
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multi-allele: split phenotype table into single and multi allele
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Other problems from: https://sourceforge.net/p/pombase/curation-tool/831/ : the existing...
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Problems from https://sourceforge.net/p/pombase/curation-tool/831/ that need fixing...
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Do we need a "qualifier" column in the phenotype table?
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Fixed by https://github.com/pombase/canto/commit/4ccf0b69c154b30d364ab3f1b44a30e...
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single gene phenotype curation and multigene phenotype curation should be in separate tabes
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display of existing session links
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"delta" in genotype name is not converted to delta symbol
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That should be fixed now too. https://github.com/pombase/canto/commit/11167cba82...
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Would it be enough add "(Gene: cdc11)" after the genotype name, like: PMID:25733668...
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I think this is a same problem in the code as mentioned here: https://sourceforge.net/p/pombase/curation-tool/831/#448b...
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Background gets lost on edit
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Fixed by: https://github.com/pombase/canto/commit/616538f0aac92eadc8c98450789a6a...
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Sorry! I made the change but forgot to re-release Canto. Is it OK now?
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I'd be happy to edit the relevant file in github, but I couldn't tell which was the...
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I've added the gene as the first column. Could you have a look and see if that was...
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NOT qualifier not displayed for existing GO annotation
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Fixed by: https://github.com/pombase/canto/commit/66ab9727b7fcb9612dd977d3f2e645...
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OK, I'd added the name and background as separate columns for now. If they are empty...
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The genotype name is missing from the annotation tables
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hide systematic ID from genotype
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Background gets lost on edit
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hide systematic ID from genotype
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I've added "for PMID:1234567" to the new and existing headers for now. Easy to change...
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We should definitely change this to "from PMID:10908327" Should this be on the new...
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multi-allele: qualifiers column contains nonsense on transfer page
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Fixed by: https://github.com/pombase/canto/commit/7954cb49c89119e3b6b3a689c6c011ff12b1d11e...
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multi-allele: hide annotation extension field on transfer page
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Fixed by https://github.com/pombase/canto/commit/befbce610c60772af69b22ea74ac88f...
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Thanks for letting me know about the genotype names. I'll use the same code to remove...
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I think I meant that for now the community will not see the "add' links OK. Should...
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not having to click the phenotype search field
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Easier than I thought - fixed! https://github.com/pombase/canto/commit/50e72d3d1...
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replace "delta" with a symbol
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Fixed! (But let me know if you see any "delta"s that I've missed) https://github...
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Multi allele phenotypes appear in the wrong table from "Add..."
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Lets say no for now. I'm confused. What are we saying no to? If members of the community...
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I've split the phenotype table into single and multi-allele tables. Could you have...
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This is currently not a problem because I forgot about about the genotype name when...
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The genotype name is missing from the annotation tables
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If we do that we could have the number of children (if any) shown under the name...
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Fixed. https://github.com/pombase/canto/commit/10739ee33b722ed2a580bfd2ebcbb64c6...
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adding a new genes when adding new genotype
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Not sure if there's an answer that will work for everyone all the time. Perhaps for...
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Fixed I think.
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show allele description on 'gene' page
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Should I close this?
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equally spaced parts of genotype descriptions?
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for each genotype, can the order of the genes automatically be rearranged in alphabetical...
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I've added a gene column. Could you have a you and see if it's what you're after...
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Fix existing phenotype annotation display
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Is this the same problem as: https://sourceforge.net/p/pombase/curation-tool/883/...
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I think it was better in the old interface where the "Add" link was next to the curation...
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"anything in Chado that isn't from Canto" Perhaps we could rename the "existing"...
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See also: https://sourceforge.net/p/pombase/curation-tool/839/
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See: https://sourceforge.net/p/pombase/curation-tool/884/ hide the empty tables on...
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