Activity for Keeyan S Ghoreshi
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Keeyan S Ghoreshi committed [7682cb]
Merge remote-tracking branch 'origin/master'
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Fixed optimization routine passing iterations parameter in the wrong place
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Changed backslashes to forward
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Changed backslash to forward slash and sleep before showing graphs
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Updated format to match parsing changes
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Updated saving methods and added ability to output .CSV for trajectories (not ensembleTrajectories yet)
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Updated command line input module
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Re-added temp foler
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Emptied temp folder
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Capitalized "example"
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Added forgotten input statement
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Added temp folder to put saved data in.
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Changed to the updated version
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Updated XML examples
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Remodeling project structure
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Testing
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Streamlined saving process, added ensemble action routine, and fixed various bugs related to saving/loading data. Made everything much more modular.
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Merge remote-tracking branch 'sloppy/Development' into Development
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Redid method for action routine parsing. Also modified Network_Mod to delete generated code even in the event of DLL failure.
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Testing
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Adding the jak_stat xml file back to the repository. Don't know why it wasn't there anymore.
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Fixed various syntax/compiler errors
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Attempt to post updated code to development
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Added preliminary command line handler and .scell file parser
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Added trajectory plotting action routine
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Took care of all the TODOs, mostly small fixes and getting rid of any hard-coding
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Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into Development
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Added network creation/modification support
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Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into Development
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Created source folder and root package
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Added files for testing on other machine
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Removing duplicates of ddaskr directory
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(Mostly) Fixed C compiling issue in NetworkMod
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Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into Development
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added debugging lines
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Added test files. Not exactly sure why they weren't here to begin with.
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ddaskr changes (fortran removal)
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Small changes to ensure file deletion
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Small changes to syntax
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Updated some small things before merging
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Added example constructor, prior defining functionality, and csv data parsing
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copied from dropbox
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Switched to XML file parsing, but kept .scell file parsing just in case
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Switched over to full xml implementation, added new experiment constructor
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Added new files and tweaked existing ones slightly
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Some quick bug fixes and an override functionality
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Modified files to work with new test construction features
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Added piecewise dynamics testing
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Finished up most examples, left out ones that are too similar to other examples and ones that are too complicated to be done with the current framework
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Redid optimization routine and added a "replace" option to overwrite cache
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Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into Development
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Finished ensemble trajectory routine, completing all graphs for Tyson Example
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Updated to include network creation
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Added a quick workaround to avoid .pyd file buildup in main directory
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Added sophisticated trajectory calculation and graphing functions
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Fixed mysterious bug related to failure to import c modules
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Example updates, added anvin's model
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Updates to example Scell files for new Optimization routine
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Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into Development
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Fixed mysterious residual adding bug & added Hessian routine
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Small changes for debugging and to show graphs
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Added network creation handling
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Created xml file to run specified example, recreates related reproduction .py file.
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Small changes to ensure compatibility with jak-stat and autocorrelation graphing from cache
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