Merge remote-tracking branch 'origin/master'
Fixed optimization routine passing iterations parameter in the wrong place
Changed backslashes to forward
Changed backslash to forward slash and sleep before showing graphs
Updated format to match parsing changes
Updated saving methods and added ability to output .CSV for trajectories (not ensembleTrajectories yet)
Updated command line input module
Re-added temp foler
Emptied temp folder
Capitalized "example"
Added forgotten input statement
Added temp folder to put saved data in.
Changed to the updated version
Updated XML examples
Remodeling project structure
Testing
Streamlined saving process, added ensemble action routine, and fixed various bugs related to saving/loading data. Made everything much more modular.
Merge remote-tracking branch 'sloppy/Development' into Development
Redid method for action routine parsing. Also modified Network_Mod to delete generated code even in the event of DLL failure.
Testing
Adding the jak_stat xml file back to the repository. Don't know why it wasn't there anymore.
Fixed various syntax/compiler errors
Attempt to post updated code to development
Added preliminary command line handler and .scell file parser
Added trajectory plotting action routine
Took care of all the TODOs, mostly small fixes and getting rid of any hard-coding
Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into Development
Added network creation/modification support
Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into Development
Created source folder and root package
Added files for testing on other machine
Removing duplicates of ddaskr directory
(Mostly) Fixed C compiling issue in NetworkMod
Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into Development
added debugging lines
Added test files. Not exactly sure why they weren't here to begin with.
ddaskr changes (fortran removal)
Small changes to ensure file deletion
Small changes to syntax
Updated some small things before merging
Added example constructor, prior defining functionality, and csv data parsing
copied from dropbox
Switched to XML file parsing, but kept .scell file parsing just in case
Switched over to full xml implementation, added new experiment constructor
Added new files and tweaked existing ones slightly
Some quick bug fixes and an override functionality
Modified files to work with new test construction features
Added piecewise dynamics testing
Finished up most examples, left out ones that are too similar to other examples and ones that are too complicated to be done with the current framework
Redid optimization routine and added a "replace" option to overwrite cache
Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into Development
Finished ensemble trajectory routine, completing all graphs for Tyson Example
Updated to include network creation
Added a quick workaround to avoid .pyd file buildup in main directory
Added sophisticated trajectory calculation and graphing functions
Fixed mysterious bug related to failure to import c modules
Example updates, added anvin's model
Updates to example Scell files for new Optimization routine
Merge branch 'master' of git://git.code.sf.net/p/sloppycell/git into Development
Fixed mysterious residual adding bug & added Hessian routine
Small changes for debugging and to show graphs
Added network creation handling
Created xml file to run specified example, recreates related reproduction .py file.
Small changes to ensure compatibility with jak-stat and autocorrelation graphing from cache