User Activity

  • Modified a comment on ticket #4 on GNAT

    I took a quick look at the code and the XML for PMID 20832752 and the expected format still appears to be valid: PubmedArticle MedlineCitation Article ArticleTitle Abstract AbstractText Hard to say what's causing the JDomParseException without throwing a debugger on it. Is there any chance of resurrecting the build script? :)

  • Posted a comment on ticket #4 on GNAT

    I took a quick look at the code and the XML for PMID 20832752 and the expected format still appears to be valid: PubmedArticle MedlineCitation Article ArticleTitle Abstract AbstractText Hard to say what's causing the JDomParseException without throwing a debugger on it. Is there any chance of resurrecting the build script? :)

  • Posted a comment on ticket #4 on GNAT

    On http://localhost:8081/?pmid=20832752&task=gner , the error: org.jdom.input.JDOMParseException: Error on line 1: White spaces are required between publicId and systemId. at org.jdom.input.SAXBuilder.build(SAXBuilder.java:468) at org.jdom.input.SAXBuilder.build(SAXBuilder.java:851) at gnat.retrieval.PubmedAccess.getAbstractsAsTitleAndTextFromXML(PubmedAccess.java:152) at gnat.retrieval.PubmedAccess.getAbstractsAsTitleAndText(PubmedAccess.java:95) at gnat.server.GnatServiceHandler.getTexts(GnatService.java:381)...

  • Posted a comment on ticket #4 on GNAT

    Hi Jörg, I'm trying to debug the above JDOMParseException, but I am unable to compile the GNAT source. Is there a build file or script (e.g. Maven pom.xml, Ant build.xml, etc.) that I can use? Thanks

  • Posted a comment on ticket #4 on GNAT

    On a related note... When I got GnatService running with the above changes, I was able to successfully see the help page at http://localhost:8081. However, when I try http://localhost:8081/?pmid=20832752&task=gner, I get the following error: org.jdom.input.JDOMParseException: Error on line 1: White spaces are required between publicId and systemId. at org.jdom.input.SAXBuilder.build(SAXBuilder.java:468) at org.jdom.input.SAXBuilder.build(SAXBuilder.java:851) at gnat.retrieval.PubmedAccess.getAbstractsAsTitleAndTextFromXML(PubmedAccess.java:152)...

  • Posted a comment on ticket #4 on GNAT

    Cool, thanks, Jörg!

  • Created ticket #4 on GNAT

    GnatService.sh won't start

  • Created ticket #3 on GNAT

    NullPointerException from TextProcessor.getEnglishWordTokens()

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