cosmetics
Last commit for this repository: inform the use...
add mpi_validation_nontilt back, now that Javi ...
Merge branch 'master' of ssh://git.code.sf.net/...
add --help option to scipion install. Closes #2162
when opening output in an external window, show...
create by default the symbolic links in addBatc...
commented out mpi_validation_nontilt because so...
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better initial guesses for MPI configuration. C...
make installation of sh_alignment off by default
fix the order of installation - sh_alignment re...
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install sh_alignment from our external package
remove sh_alignment from xmipp - it will be an ...
better find mpi
bigger default size before showing partial outp...
try to guess location of mpi during the configu...
added optional installation of cmake, so it doe...
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use javac instead of java to guess the location...
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neededLibs -> libChecks , and it is already bei...
more informative output if guessJavaHome() cann...
when creating scipion.conf , set JAVA_HOME to o...
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add guessJavaHome function to pw_config.py , so...
lapack needs gfortran
addLibrary now checks for the needed progams an...
if we asked to build an unknown target, the err...
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pass arguments to scipion deps escaped so sp...
scipion dependencies -> scipion deps
+ script find_deps.py to find which system exte...
fix the except part in funcs.py so it works wit...
use CPPFLAGS and LDFLAGS too when compiling wit...
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cosmetics, make scipion config look beautiful
if there is an error in the configuration file,...
remove what seems to be a debug print introduce...
explain what is going on with numpy and flags i...
if the main scipion script catches an error, re...
pass -DWITH_CUDA:BOOL=OFF flag to cmake if we a...
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actually update the proper environment - not te...
in binary mode, also change things inside softw...
fixed bug in AddOption at scipion_sconscript: w...
change -I in CFLAGS to CPPFLAGS, where it shoul...
fix software/em/xmipp/.gitignore file so it act...
add dependency nfft3 to pytom for the installation
if SCIPY exists in the configuration file, and ...
add nfft library, also with its tgz in asimov, ...
fix the prepare Command to pass an environment ...
prepare Command to pass an environment when bei...
ignore extra stuff in .gitignore (config/backup...
ignore autogenerated file with logs when compil...
clean up .gitignore in root directory, it had s...
removed software/em/xmipp/libraries/bindings/ja...
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fix two steps of TestXmippDenoiseParticles
make funcs.py compatible with python2.4
created Makefile to compile and install sh_alig...
deleted files automatically generated by swig
change compile.sh in sh_alignment so it will no...
remove check on programs to be made only in "re...
add xmipp programs that used to be compiled
fix opencv section in software/em/xmipp/scipion...
use sensible environment when compiling java, i...
check if MATLAB is defined before removing it, ...
cleanup
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options related to how to build things in scipi...
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warn if you have an old version of the configur...
in scipion config check also for existing ja...
if we run scipion --config some_path/scipion.c...
indentation cosmetics
stop warning about SPIDER not being there if we...
do not overwrite sourceable shell files (xmipp....
minor clarification
create also xmipp.fish, and cleanup a bit that ...
whitespace cleanup - due to psychological ingra...
read also local hosts.conf configuration -- wit...
read also local protocols.conf configuration
create and check all the config files in the pr...
use SCIPION_LOCAL_CONFIG, and closer to finishi...
update global scipion config with the local def...
check the config files from the proper installa...
create config/templates and move all the templa...
settings -> config
go back to checking all the targets, not only t...
Merge branch 'master' of ssh://git.code.sf.net/...
fix protocol_helical_parameters.py, now the cre...
let the tutorial get any number of parameters -...
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make _existsAll() work for empty _commandList
remove unnecessary : and comment what is going...
add TODO about checking for gfortran