Activity for Jordi
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Jordi committed [0d7f59]
cosmetics
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Last commit for this repository: inform the use...
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add mpi_validation_nontilt back, now that Javi ...
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Merge branch 'master' of ssh://git.code.sf.net/...
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add --help option to scipion install. Closes #2162
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when opening output in an external window, show...
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create by default the symbolic links in addBatc...
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commented out mpi_validation_nontilt because so...
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cosmetics
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cosmetics
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better initial guesses for MPI configuration. C...
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make installation of sh_alignment off by default
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fix the order of installation - sh_alignment re...
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cosmetics
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install sh_alignment from our external package
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remove sh_alignment from xmipp - it will be an ...
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better find mpi
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bigger default size before showing partial outp...
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try to guess location of mpi during the configu...
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added optional installation of cmake, so it doe...
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cosmetics
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use javac instead of java to guess the location...
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cosmetics
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cosmetics
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neededLibs -> libChecks , and it is already bei...
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more informative output if guessJavaHome() cann...
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when creating scipion.conf , set JAVA_HOME to o...
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cosmetics
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add guessJavaHome function to pw_config.py , so...
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lapack needs gfortran
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addLibrary now checks for the needed progams an...
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if we asked to build an unknown target, the err...
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cosmetics
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pass arguments to scipion deps escaped so sp...
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scipion dependencies -> scipion deps
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+ script find_deps.py to find which system exte...
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fix the except part in funcs.py so it works wit...
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use CPPFLAGS and LDFLAGS too when compiling wit...
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cosmetics
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cosmetics, make scipion config look beautiful
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if there is an error in the configuration file,...
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remove what seems to be a debug print introduce...
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explain what is going on with numpy and flags i...
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if the main scipion script catches an error, re...
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pass -DWITH_CUDA:BOOL=OFF flag to cmake if we a...
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cosmetics
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actually update the proper environment - not te...
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in binary mode, also change things inside softw...
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fixed bug in AddOption at scipion_sconscript: w...
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change -I in CFLAGS to CPPFLAGS, where it shoul...
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fix software/em/xmipp/.gitignore file so it act...
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add dependency nfft3 to pytom for the installation
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if SCIPY exists in the configuration file, and ...
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add nfft library, also with its tgz in asimov, ...
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fix the prepare Command to pass an environment ...
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prepare Command to pass an environment when bei...
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ignore extra stuff in .gitignore (config/backup...
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ignore autogenerated file with logs when compil...
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clean up .gitignore in root directory, it had s...
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removed software/em/xmipp/libraries/bindings/ja...
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cosmetics
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fix two steps of TestXmippDenoiseParticles
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make funcs.py compatible with python2.4
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created Makefile to compile and install sh_alig...
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deleted files automatically generated by swig
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change compile.sh in sh_alignment so it will no...
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remove check on programs to be made only in "re...
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add xmipp programs that used to be compiled
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fix opencv section in software/em/xmipp/scipion...
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use sensible environment when compiling java, i...
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check if MATLAB is defined before removing it, ...
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cleanup
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cosmetics
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options related to how to build things in scipi...
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cosmetics
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warn if you have an old version of the configur...
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in scipion config check also for existing ja...
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if we run scipion --config some_path/scipion.c...
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indentation cosmetics
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stop warning about SPIDER not being there if we...
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do not overwrite sourceable shell files (xmipp....
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minor clarification
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create also xmipp.fish, and cleanup a bit that ...
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whitespace cleanup - due to psychological ingra...
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read also local hosts.conf configuration -- wit...
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read also local protocols.conf configuration
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create and check all the config files in the pr...
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use SCIPION_LOCAL_CONFIG, and closer to finishi...
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update global scipion config with the local def...
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check the config files from the proper installa...
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create config/templates and move all the templa...
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settings -> config
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go back to checking all the targets, not only t...
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Merge branch 'master' of ssh://git.code.sf.net/...
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fix protocol_helical_parameters.py, now the cre...
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let the tutorial get any number of parameters -...
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cosmetics
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make _existsAll() work for empty _commandList
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remove unnecessary : and comment what is going...
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add TODO about checking for gfortran
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