I have a simelar problem in Eclipse Neon 3. My intermediate solution is: The normalization of tables works, if I change the line delimiter for the file in question to UNIX (menu path: File->Convert Line Delimiters To->Unix). In files with DOS/Windows line delimiters, the normalization does not work for me. The other way around (UNIX delimiter on Windows workstation) I could not test yet, if this would help either, please tell me, I can arrange that with low overhead (a couple of minutes). Perhaps...