Joanna Griffiths

Hi Kyle, This issue was specific to the sliding window script. I managed to fix the issue by changing some of the parameters. I decreased the min-count and min-covered-fraction from the example in the tutorial. These were my final parameters: --min-count 2 --min-coverage 5 --max-coverage 200 --min-covered-fraction 0.2 I think the main issue was that the min-covered-fraction cannot be at 100% (ie 1), so decreasing this should make it work. Rarely will there be sufficient coverage at every single base...

Hello, I have run into the same problem and was wondering if this was resolved? Thank you