Activity for jcarey

  • jcarey jcarey committed [r1957]

    Removed debugging message from BlockCompressedI...

  • jcarey jcarey committed [r1956]

    Fix failing check dir tests

  • jcarey jcarey committed [r1955]

    Fix for CheckIlluminaDirectory when the number ...

  • jcarey jcarey committed [r1954]

    [r1953] (HEAD) by jacarey

  • jcarey jcarey committed [r1953]

    Merge trunk to branch jc_file_util_refactor

  • jcarey jcarey committed [r1952]

    Reverting previous merge

  • jcarey jcarey committed [r1951]

    Merged changes from the jc_file_util_refactor b...

  • jcarey jcarey committed [r1938]

    Multi-tile parser changes.

  • jcarey jcarey committed [r1922]

    Code clean up and optimization of SequenceUtil....

  • jcarey jcarey committed [r1917]

    assert file structure for bcl only on uncompres...

  • jcarey jcarey committed [r1916]

    Fix tile filtering for multi tile bcl files.

  • jcarey jcarey committed [r1915]

    Initial pass on making sure we are cleaning up/...

  • jcarey jcarey committed [r1912]

    Fixed BCLReader tests and added back support fo...

  • jcarey jcarey committed [r1908]

    Added better Bcl parsing. Reader test is still ...

  • jcarey jcarey committed [r1905]

    Basic refactor of per tile and per cycle per ti...

  • jcarey jcarey committed [r1904]

    Pulled subclasses out of IlluminaFileUtil.

  • jcarey jcarey committed [r1903]

    Remove extraneous test data files.

  • jcarey jcarey committed [r1893]

    Removed support for Qseq, Cif and Cnf file form...

  • jcarey jcarey committed [r1892]

    Adding a new branch for the Illumina file util ...

  • jcarey jcarey committed [r1891]

    Merged nh_mate_cigar_refactoring r1775:r1889 in...

  • jcarey jcarey committed [r1890]

    Revert modified function arguments.

  • jcarey jcarey committed [r1889]

    Reassign the file util when checking symlinks s...

  • jcarey jcarey committed [r1888]

    Set ADD_MATE_CIGAR to false by default.

  • jcarey jcarey committed [r1885]

    Create lane directories for symlinks if they do...

  • jcarey jcarey committed [r1757]

    Added flag to CheckIlluminaDirectory to have it...

  • jcarey jcarey committed [r1748]

    Fix for linux test hanging on CheckIlluminaDire...

  • jcarey jcarey committed [r1746]

    Added file faking and per tile filtering to Che...

  • jcarey jcarey committed [r1735]

    Added the ability to pass an expected quality f...

  • jcarey jcarey committed [r1734]

    Added SamFileTester to facilitate creation and ...

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