File	Date	Author	Commit
bin	2012-03-15	Luca Pireddu	[bb947d] Use new java_app_runner class in launchers
docs	2012-10-19	Luca Pireddu	[307f1f] Fix broken link in docs
examples	2012-03-11	Luca Pireddu	[7901db] Fix import package paths
galaxy-integration	2012-01-26	Luca Pireddu	[eaa826] whitespace clean-up.
seal	2012-10-04	Luca Pireddu	[97fcba] Vim modeline
src	2012-09-18	Luca Pireddu	[94d9cb] Fix silly error
tests	2012-09-18	Luca Pireddu	[f21e18] Add main() methods to unit test classes
.gitignore	2012-03-11	Luca Pireddu	[9196d8] Fix package paths in .gitignore
AUTHORS	2011-05-06	Luca Pireddu	[7c41c8] fixed typo
COPYING	2011-04-08	Luca Pireddu	[d8818d] * added GPL licence notice and copyright
MANIFEST.in	2012-03-16	Luca Pireddu	[ddd8a2] correct bl paths
Makefile	2012-03-26	Luca Pireddu	[4d0fab] Insert default rule. Label phony rules.
README.txt	2012-03-16	Luca Pireddu	[3badd2] Clean up README and refer to documentation onli...
build.xml	2012-05-21	Luca Pireddu	[f97d90] Set log4j config in run-one-test
setup.py	2012-04-07	Luca Pireddu	[92b767] Pass HadoopBAM path to ant build file

Read Me

==================
Seal
==================


Seal is a suite of distributed applications for aligning short DNA reads, and
manipulating and analyzing short read alignments.  Seal applications generally run on the Hadoop
framework and are made to scale well in the amount of computing nodes available
and the amount of the data to process.  This fact makes Seal particularly well
suited for processing large data sets.

See the documentation at http://biodoop-seal.sourceforge.net/ for more information.


Install
+++++++++++

Please see the Seal documentation at http://biodoop-seal.sourceforge.net/.
Alternatively, if you have Sphinx installed you can make your own local copy
of the documentation::

  make doc

Authors
++++++++++++

Seal was written by:
 * Luca Pireddu <luca.pireddu@crs4.it>
 * Simone Leo <simone.leo@crs4.it>
 * Gianluigi Zanetti <gianluigi.zanetti@crs4.it>


License
++++++++

Seal and its components are released under the `GPLv3 license <http://www.gnu.org/licenses/gpl.html>`_.


Copyright
++++++++++

Copyright CRS4, 2011-2012.