User Activity

  • Posted a comment on discussion Help on Seal

    Hi, MAP_POPULATE has been supported in Linux since 2.5.46, so it's odd that you get that error. Try man mmap on your system and make sure that it supports that flag. Also, make sure you have the libc development package installed. I should also point out that Seal hasn't been developed in a number of years so it's likely out of date with the current versions of its dependencies. I just tried to reproduce your error by compiling the version you're using; I couldn't reproduce the same error, but I...

  • Posted a comment on discussion Help on pydoop

    Hi Mayank, when using the regular pipes API you can ask the TaskContext for the configuration...

  • Posted a comment on discussion Help on pydoop

    Or implement a ChainMapper for Pydoop, which we'd be happy to integrate into the...

  • Posted a comment on discussion Help on Seal

    ImportError: No module named Bio.SeqIO It looks like you need to install BioPython....

  • Posted a comment on discussion Help on Seal

    Sure there is. The installation procedure you should produce an archive that contains...

  • Posted a comment on discussion Help on Seal

    Is the file there and is it readable? You may be trying to run the files in the source...

  • Posted a comment on discussion Help on Seal

    Maybe all the reads are unpaired?

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Personal Data

Username:
ilveroluca
Joined:
2004-08-09 06:22:24

Projects

This is a list of open source software projects that Luca Pireddu is associated with:

  • Hadoop-BAM   Last Updated:
  • Project Logo Seal A toolkit for distributed processing of HT sequencing data. Last Updated:
  • SeqPig Use Apache Pig to process your large sequencing datasets! Last Updated:
  • pydoop   Last Updated:

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