Homa

Dear Pasi, Lepmap integrates many more markers into the map compared to Crimap. When there is no recombination or very low amount of recombination, I see for some markers, there is some noise in calculating the genetic map location. An example is seen below for the non-recombining segment of the sex chromosome in females: chrZ 58175814 58175815 81.163 scaffold62 2446259 chrZ 58181948 58181949 79.14 scaffold62 2452393 chrZ 58182233 58182234 79.14 scaffold62 2452678 chrZ 58216972 58216973 81.163 scaffold62...

Dear Pasi, Thank you very much for your response. Could you please explain a bit more what it means that it restricts the two positions to be exactly the same? In what regard they should be the same? Thanks, Cheers, Homa

Dear Pasi, I was wondering how Lepmap2 computes sex averaged map? For the following positions (male and female positions): 3.096 4.768 I would obtain ((3.096+4.768)/2)=3.932 as the sex averaged position However, Lepmap2 gives 5.146 as the sex averaged. This is true for other positions as well. How is it then calculated? Thank you, Homa

Dear Pasi, Thank you very much, your answer was really helpful. I will describe the...

Dear Pasi, Thank you very much for your great help throughout my analyses. I have...

Dear Pasi, I was asked to run the linkage analysis using CRIMAP as well as Lepmap2....

Dear Pasi, I was wondering how much the order of the markers that have the same map...