Activity for Henning Lindhorst
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Henning Lindhorst committed [e71ff5]
added reversibility for reactions, changes to n...
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reworked rba as with ipopt solver, used linopt ...
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added deFBA algorithm, warning rba is broken. S...
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working version of RBA
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added basic RBA method implemented in gurobi
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corrected error in sorting stoich, species, and...
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added catalytic constants for biomass productio...
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added function to construct HC matrix
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added calculation of biomass vector via fasta data
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added molecular weight search and fixed some co...
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added ribosomes to model; added energy cost to ...
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added a function to create the configuration fi...
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added config file parser to the code for user, ...
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added functions to sort the species to [x_ext, ...
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added function to add protein producing reactio...
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added function to add new reactions from OR ter...
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added interfaces to KEGG, BRENDA, YeastGenome t...
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cleared code and deleted unnecessary variables/...
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added documentation
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added additional methods for ode_rhs and rate e...
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working casadi integrator with variables support
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trying to include brn.variables as DAE to the c...
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added CasadiSimulator class
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added method to set rates as mass-action law ra...
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added import function from Brn to BrnCas
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added import function from Brn to BrnCas
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added simulator method to brncas class and suit...
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corrected copy & paste error
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initial part for casadi class
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