Activity for Harold J. Drabkin
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Harold J. Drabkin posted a comment on ticket #117
I still need an id for the SN form for PMID:11018052 of Agrn (SN form)
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Also used A2AHT3 using PMID:11792319 and A2AEW1 using PMID:16936731
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Also used A2AHT3 using PMID:11792319
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Same group annotated to D3YWT3; need to move into PRO; using PMID:20044351
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The same group has used D3YX90 for annotation using PMID:22159717. Needs to be moved into PRO
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E9PYB0
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F8VPM9
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J3QQ16
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discs large homolog 2 isoform 9 (aka isoform eta)
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Answer to 1: yes; I can furnish the gene it's suppose to belong to if need. 2. The entries chosen for the GOA mouse ones are their curator decisions. We assume they know what they are doing. Even single amino acid differences may be important. I have actually put in varients into RACEPRO at times . The key here is that the ids get associated with the correct gene in MGI so that they can be used.
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two entries in pro/id
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Promote trembls to full PR ids
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Promote PR:Q7TSK9
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PR:Trembl records to allow in files
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So I"m wondering if this is maybe a problem with the concept of salvage. In these...
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I can find no literature indicating existence of free threonylcarbamoyladenosine....
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N6-threonylcarbamoyladenosine (t6A) is a universally conserved, essential modified...
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Q modification in trna: In some organisms Q is swapped into the TRNA molecule. In...
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If GO:0070526 can occur outside of the mitochondria, then no they are not the same....
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Basically from what I looked up thioredoxin-disulfide reductase activity : not free...
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PRO and Intact are currently trying to sort out id space. IntAct has a nice interface...
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PRO and Intact are currently trying to sort out id space. IntAct has a nice interface...
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However, this also works http://www.informatics.jax.org/accession/MGI:5317033
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In the GO.xrf_abbs Note the url syntax MGI: must prefix the MGI:xxxxx, since the...
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The def: A heterodimeric enzyme complex composed of subunits leuC and leuD. Catalyzes...
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Peter: minimally two are needed. If we only had one to encompass all three, then...
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Yes, I just want to be sure that there is NOT a case that JUST the C is added. It's...
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It appears the might have gotten split out tRNA + CTP -> tRNA-C Then CTP + tRNA-C...
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One might want to look at:PMID:18523015 Evolution of tRNA nucleotidyltransferases:...
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This is a VERY large and ONGOING project; we make as we need. Many are being added...
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I'm not sure it if is involved in any other things either; From Wiki, "In addition,...
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Changed def of GO:0045502 However, as per a complex: apparently many concatenations...
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Yes this is a substrate, just like ATP and the amino acid. I see no reason to add...
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Query about translation initiatation
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I'm not sure I really like GO:0042256, as it might imply that the ribosome can assemble...
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Hi Paola; just seeing this now as yesterday I was out. I think Alex might want to...
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Hi Paola; just seeing this now as yesterday I was out. I think Alex might want to...
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Rubidium Biological Role?
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most likley; the biosynthetic term into the newly made general term. ; I need to...
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So based on the new term I added because we needed a non-mitochonrial counterpart...
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These two terms are really the same I think anyways; one says it directly (in term...
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As far as I know, and my 'expert' agrees, the only way threonylcarbamoyladenosine...
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Added GO:0002949 tRNA threonylcarbamoyladenosine modification as child of tRNA modification...
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Yes, I agree to put it under "cytoplasmic This is part of the larger needed overhaul...
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In PRO PR:000005867=corticoliberin; in CHEBI it seems to refer to the HUMAN one,...
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pasting in from an email; Excellent! Good catch. I'm embarrassed I didn't prefilter...
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You are right; these are my missing comments to another; I'll delete
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Committed x-bp-protein.obo
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Finished and committed x-mf-protein.obo; still workong on bp
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Add capable_of for GO:0002178 ! palmitoyltransferase complex
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I see these and I often wonder what the intent is. An activity implies that the gene...
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These summarize the other two entries I made that appear in the SF ontology-requests...
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I made two other posts but they are not showing up!
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ah Aspirin is acetylsalicylic acid and not salicylic acid. Aspirin is derived from...
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I'm reposting here as something got lost. I question any claims that they can detect...
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Hi What I have been doing is seeing if any of these participates in something that...
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yes; that was my question before I was going to add it. Yes: 4758 is the correct...
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OTR: translation initiation factor activity
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MP GO:0052888 dihydroorotate oxidase (fumarate) activity
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This is in the comment field EC has determined that this reaction in fact does not...
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Does this really need this; it already has capable_of to its child, serine C-palmitoyltransferase...
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done;
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NT: Archaeosine synthase activity & add to def of archaeosine-tRNA biosynthetic process
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Added x-product of GO:0043967 to GO:0002927
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Added NT archaeosine synthase activity GO:0002948
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Ok, I now see that no, they are not the same. The one you are requesting is a step...
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Just noticed this. I think 7-cyano-7-deazaguanine tRNA-ribosyltransferase activity,...
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cytochrome complex
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fix def for glycosylation
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Changed text def to "The covalent attachment and further modification of carbohydrate...
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I think so; could that starts_with some GO:0016757 be construed to also mean not...
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How about "The covalent attachment and further modification of carbohydrate residues...
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I'll use wiki as a starting source here (aka devil's advocate): Glycosylation (see...
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Val, I would also be happy to have "homodimer" in CC, especially when I have to make...
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The original post, however was addressing these guys GO:0042803 protein homodimerization...
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Val: But only if they are homo-oligomers; not all protein complexes are homo anything....
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The homotrimerization is a specific type of complex assembly. Note that there could...
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Val; protein self-binding doesn't infer a stop at dimer Interacting selectively and...
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We did NOT agree to implement this officially as far as I can remember I still don't...
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We did NOT agree to implement this officially. I still don't see what the problem...
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ntr: isogloboside biosynthetic process
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Crated GO:1990387 Label: isogloboside biosynthetic process vis term genie
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MP GO:0052888 dihydroorotate oxidase (fumarate) activity
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Obsoleted term on 5/29/14
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Additionally, these things don't just regulate a process, they ARE the involved in...
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It's as much an activity as "transcription factor activity", which was brought back....
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other term related request: GO:0033290
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Added the two Rama suggested; I have found other protein synthesis related ones that...
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Added the two Rama suggested; I have found other protein synthesis related ones that...
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Added the two Val suggested; I have found other protein synthesis related ones that...
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The mediator complex story is IMHO a mess and is very complicated, as, at least for...
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All of those terms went in before we had the ability to indicate a has_part
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Hi Rama No; the subunits are found in other complexes, etc., or even free. GO:0033290...
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Hi Val The reference in yeast is for the fumarate dependent enzyme, not the O2 dependent...
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I got this back from EC; The term should be obsoleted. Dear Harold, EC 1.3.3.1 was...
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There appears to be a single IDA (From RGD) to 1.3.3.1; I need to see the original...
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the globoside biosynthesis and isogloboside biosynthesis will be sibs; both start...
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use these PMIDs also for structures PMID:18810447 and PMID:18630988
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CHEBI:78257 requested
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A protein is a protein. It doesn't matter where it is from as a classification. It...
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