Emily Crantell

Hello everyone, I am brand new to this software and I will need a little help to align two sequences. I have downloaded the files in FASTA format and I know that the usage is the following: mummer -mum -b -c ref.fasta qry.fasta > ref_qry.mums but can someone please show me how this is done with a real example, step by step. Also, I am not sure where to find the query that is required and how do I save it in .mums format. I appreciate your help and support!