Ah, I totally missed that! Thanks for your help :)
Yes, here it is. Thanks for your help!
Hello, I am new to LepMap and am working on creating a linkage map with 10 families of fruit fly. My pedigree file begins as follows: CHR POS 1 1 1 1 CHR POS C1_5_3_2_3_BM C1_5_3_2_3_BF C1_5_3_2_3_10_BF C1_5_3_2_3_10_BM CHR POS 0 0 C1_5_3_2_3_BM C1_5_3_2_3_BM CHR POS 0 0 C1_5_3_2_3_BF C1_5_3_2_3_BF CHR POS 1 2 2 1 CHR POS 0 0 0 0 I ran ParentCall2 using the following command: java -cp ./Documents/LepMap3/binary+code/bin ParentCall2 data = ./Documents/Alud_data/Alud_oldddRAD_pedigree.txt vcfFile =...