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File Date Author Commit
 addons 2014-06-17 Gert Wollny Gert Wollny [28e642] add photometric interpretation and correct acqu...
 apps 2011-01-03 Gert Wollny Gert Wollny [336a11] start working on a perfusion analysis gui
 cmake 2014-06-15 Gert Wollny Gert Wollny [9cbcdf] let the xml-help write to a file instead of stdout
 doc 2014-05-27 Gert Wollny Gert Wollny [e0d361] add rotbend transform and get bending tests pas...
 examples 2014-02-17 Gert Wollny Gert Wollny [753447] update copyright year
 gsl++ 2014-02-17 Gert Wollny Gert Wollny [753447] update copyright year
 mia 2014-07-03 Gert Wollny Gert Wollny [272418] Merge support for all variants of the normalize...
 octave 2014-02-17 Gert Wollny Gert Wollny [753447] update copyright year
 output 2010-08-05 Gert Wollny Gert Wollny [a53c24] change modes
 scripts 2013-02-25 Gert Wollny Gert Wollny [030c8f] correct license entries
 src 2014-07-03 Gert Wollny Gert Wollny [3bf75e] Remove warning in maximum intensity projection ...
 test 2014-05-22 Gert Wollny Gert Wollny [cf8144] correct tests for new plug-ins
 testdata 2014-02-17 Gert Wollny Gert Wollny [753447] update copyright year
 testhelpers 2014-04-29 Gert Wollny Gert Wollny [ffa848] add localized unmasked normalized cross correla...
 .gitignore 2014-04-23 Gert Wollny Gert Wollny [32decd] merge the 3dorientation branch
 AUTHORS 2012-09-17 Gert Wollny Gert Wollny [925b32] update authors
 CMakeLists.txt 2014-04-29 Gert Wollny Gert Wollny [372076] add masked mi and ssd for 2D images
 COPYING 2010-08-05 Gert Wollny Gert Wollny [a53c24] change modes
 ChangeLog 2013-11-20 Gert Wollny Gert Wollny [02e960] Update changelog.
 Makefile.outoftree 2011-05-17 Gert Wollny Gert Wollny [41d303] add build type
 NEWS 2012-11-12 Gert Wollny Gert Wollny [4ddeb3] more docu for new release
 README 2013-10-14 Gert Wollny Gert Wollny [68336f] Add the reference and some more notes.
 UseMia.cmake.in 2010-08-05 Gert Wollny Gert Wollny [a53c24] change modes
 config.h.cmake 2013-11-15 Gert Wollny Gert Wollny [f75000] Move plug-ins that are configurable to the addo...
 create_package 2012-11-22 Gert Wollny Gert Wollny [70a6d9] update changelog
 mia.hh 2014-02-17 Gert Wollny Gert Wollny [753447] update copyright year
 mia.pc.cmake 2011-10-20 Gert Wollny Gert Wollny [309ea3] change pkg-config files
 mia2d.pc.cmake 2011-10-20 Gert Wollny Gert Wollny [309ea3] change pkg-config files
 mia2dmyocardperf.pc.cmake 2011-10-20 Gert Wollny Gert Wollny [309ea3] change pkg-config files
 mia3d.pc.cmake 2013-12-09 Gert Wollny Gert Wollny [5068d2] Add dependency on eigen3
 miaconfig.h.cmake 2014-04-24 Gert Wollny Gert Wollny [0c1a8c] Correct the compilation of the no-debug-trace m...
 miacore.pc.cmake 2013-07-18 Gert Wollny Gert Wollny [d57b86] correct dependencies (still not completely corr...
 miacore.pc.in 2010-08-05 Gert Wollny Gert Wollny [a53c24] change modes
 miamesh.pc.cmake 2012-03-21 Gert Wollny Gert Wollny [3e60f7] add a pc file for the mesh library
 run-test-with-valgrind.csh 2011-10-10 Gert Wollny Gert Wollny [ac9e04] change permissions

Read Me

SYNOPSIS: 

MIA is a collection of libraries and command line tools for the processing 
of gray scale images.

For details, help, etc see http://mia.sourceforge.net

If you use this software for scientific research, please cite it as 

  Wollny G, Kellman P, Ledesma-Carbayo M-J, Skinner MM, Hublin J-J, and Hierl Th, 
  "MIA - A Free and Open Source Software for Gray Scale Medical Image Analysis", 
  Source Code for Biology and Medicine, 2013, 8:20


SUPPORT: 

For support with running MIA or developing new software using MIA please go to 

   https://sourceforge.net/p/mia/discussion/

REPORTING BUGS:
 
Please use the bug tracker at sourceforge to report new bugs: 

  https://sourceforge.net/p/mia/tickets/

KNOWN BUGS: 

* Image orientation and pixel size information is not honoured in the image registration code. 
* the implementation of Mutual information needs testing
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