Added flag to IlluminaBasecallsTo[Sam|Fastq] to...
Made method 'doWork' public in RevertOriginalBa...
Added MateCigar to SAMRecord as an optional Att...
Folded in results of code review.
Set MateCigar to null explicitly for unmapped pair
Added validation of mateCigar to SamRecord
Reverted to using Mishali's getMateCigarString ...
Work on adding MateCigar string as an attribute...