Fernando Silva Aguilar

Dr. Han: I have been running IBDLD program for a set of 50 inbred lines of maize. I have been using GIBDLD program which gave me good results. However, recently I found some pedigree information about each inbred line and I am trying to run LD-RR method. I have in total 160158 SNP across 10 chromosomes. The chromosome 1 have 24846 markers. I run method LD-RR with -ploci 10 -dist 2, the kinship file created using IdCoefs 2.1.1, and with hidden states 90. When looking at the results from ibdtxt file,...