Flavio Augusto Vicente Seixas

Dear Sarkis, I replaced the PyRx folder according to the instructions, but the program does not launch. After replacing the PyRx folder, I go to the following directory: /usr/local/PyRx-0.9.2 and used the command: ./run.sh However, PyRx does not launch and no error message appears. Could you help me? Flavio

Dear Sarkis, Thank you for the link. But my PyRx-0.9.2 is installed at the following directory: /usr/local/PyRx-0.9.2/ And inside the main directory of the above folder, there are not a folder named "PyRx" to replace by the new one downloaded (see picture attached). How can I proceed?? Best regards, Flavio

Dear Sargis, Thank you very much for your reply. The installation was successful now. However, the version of PyRx I am using (-0.9.2) had a display problem that I mentioned in a previous post here: https://sourceforge.net/p/pyrx/discussion/general/thread/752221a0/ Your recommendation that time, was to "Check for updates" to fix the problem. Well, the problem appeared again after the installation of the original version, but when I checked for updates, I found the following error message: Error in...

Hi, I had PyRx-0.9.2-linux-x86_64 on an octa-core PC running Linux CentOS-7. However, CentOS-7 is no longer supported and I needed to update to "CentOS Stream 9". I tried to install the program as follows as root user: first I install the dependencies: yum install -y libpng12.x86_64 SDL2.x86_64 mesa-libGLU.x86_64 Then I install PyRx: ./PyRx-0.9.2-linux-x86_64.install The installer runs well, without any error message, however, the program does not launch and the shortcut is not created. I also tryed...

Hi. Thank you for your answer. Please, find attached the video. I hope it helps. Flavio

Previous versions of PyRx (0.8) does not have this problem on display with "endogenous ligands" Could you help me? PS. Congratulations for PyRx! I published several papers using it.

Attached is my pdb file, if it helps.

Hi, When I do the docking of a ligand co-crystallized (or modeled) with the protein (redocking), I notice that by clicking on any pose, it appears on the display and then I can no longer remove it, even if uncheck the respective box (figure attached). This does not happen when I use an external source ligand (*.sdf for example) My system is CentOS-7.4_x86_64 Pyrx-0.9.2 uptated to 0.9.8 after check for updates. AutoDock 4.2 Release 4.2.5.1 Regards, flavio