Activity for elizabeth henaff
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elizabeth henaff posted a comment on ticket #5
Great, thanks for the info! Cheers, Elizabeth -- Elizabeth Hénaff, PhD | elizabeth-henaff.net Postdoctoral Associate Institute for Computational Biomedicine, Weill Cornell Medical College +1 512 299 3051 On Sun, Jul 2, 2017 at 9:36 PM, OliverLin oliverlinnhri@users.sf.net wrote: Thank you for using MyCC's docker and figuring out how to run. For those data we provide in sourceforge, we blasted contigs against their reference genomes to prodcuce the .spe.txt. We did not assign secies to clusters, but...
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slight changes to docker image / species classification question
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Home
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Home
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Welcome
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update README and clean up code for release
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new branch to start dev of bwa-mem split read s...
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in process of implementing AnnotVector. --XL1 w...
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added option --XL1 with which to specify direct...
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added option to specify tag to use for alternat...
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fix
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fix python path
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fixed discordant read selection to exclude seco...
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revert to IntervalFile implementation for TE an...
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fix
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fix memory leak, runs too slow now. Problem is ...
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change implementation of discordant read select...
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mem profile
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fix error in filtering -- consistent fam
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more debug
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more debug
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more debug
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change filter to argparse, debug
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changed jitterbug.py to argparse, fixed bug in ...
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add to README
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tidy up process_ND_TD.py output, add scripts fo...
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sim_SV.py
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sim_SV.py
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sim_SV.py
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added to README
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fixed bugs in plotting, output in process_ND_TD
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updated jip scripts, added run stats output fil...
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using only psorted bam works now
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more implementation, still needs testing
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implement psorted input only - needs testing
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cleaned up code a bit
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fixed bug in process_ND_TD - now running this a...
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added jit module for processing ND/TD pairs, wo...
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jip scripts to run jitterbug, and to filter res...
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getting filtering to work with jip
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jitterbug generates config file for "reasonable...
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fixed bug when --mapq absent
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filter module in jip
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running jitterbug as a jip tool now works
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added scripts to run with jip
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changed so that jitterbug contains main, and ca...
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add scripts for filtering results, processing t...
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update
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