Activity for Don Gilbert
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Don Gilbert modified a blog post
Do DNA and cytometric measures agree on genome sizes?
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Do DNA and cytometric measures agree on genome sizes?
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Gnodes#2 long and short of it, early draft
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Gnodes/Genome Depth Estimator 3rd paper
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Notes on evigene 2023 july update
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EvidentialGene update 2023-july-15
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evigene22may07 update
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Evigene 22jan14 update
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Evigene 22jan14 update
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Gnodes/Genome Depth Estimator
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EvidentialGene software major update v4
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Evigene transcript class summary, update v4
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Reference protein annotation with namegenes
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Reference protein annotation with namegenes
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Reference protein annotation with namegenes
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Longest protein, longest transcript or most expression? paper
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Preserve best homology transcripts in tr2aacds
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SRA2Genes Test Drive
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Leonardo, yes, you can rerun tr2aacds.pl, with same invocation, in same data folder, and expect it to pick up where it left off at the last interruption. The pipeline looks for intermediate data files to decide where to restart. You shouldn't need to erase any of those partly done blast outputs. The log file will list which parts have been skipped. The self-blast part takes the longest time, generally. Don Gilbert .. PS, mailing list https://groups.google.com/forum/#!forum/evidentialgene is more...
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Proteins from transcripts, ORF methods compared
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Proteins from transcripts, ORF methods compared
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evigene19jan01 software release updates
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Home
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Doc on Genes of the Pig reconstructed with EvidentialGene
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How To Install/Use Evigene doc
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Pig genes reconstructed with SRA2Genes
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Zebrafish gene set built with SRA2Genes pipeline
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Zebrafish gene set built with SRA2Genes pipeline
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Home
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gene-transcript ID table from evgmrna2tsa
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EvidentialGene sra2genes DRAFT version 2017.12
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Home
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EvidentialGene sra2genes DRAFT version 2017.12
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Evigene versus Transdecoder for proteins from transcripts
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Error of longest-transcript-filters like cd-hit-est
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Home
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Home
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Home
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trformat usage
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Why more proteins than transcripts, i.e. UTR-ORFs
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EvidentialGene set for Bemisia tabaci whitefly
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Evigene set for Arabidopsis thaliana model plant
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EvidentialGene set for Bemisia tabaci whitefly
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Evigene surpasses Maker and NCBI models, PacBio and Trinity/Illumina of 4 Animal and Plant gene sets
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Evigene surpasses genome models, Trinity/Illumina and PacBio gene sets of Pine trees
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EvidentialGene gene construction for Zea mays corn plant
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Wu, My comments are for Q1: the okayset/ folder contains primary and alternate transcripts,...
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Mosquitoes also, Evigene builds higher quality genes than MAKER+Trinity
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Mosquitoes also, Evigene builds higher quality genes than MAKER+Trinity
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Mosquitoes also, Evigene builds higher quality genes than MAKER+Trinity
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Mosquitoes also, Evigene builds higher quality genes than MAKER+Trinity
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Home
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Aedes and Anopheles mosquito EvidentialGene sets update
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Mosquitoes also, Evigene builds higher quality genes than MAKER+Trinity
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Home
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Planned update genome + transcriptome, Spring 2016
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High quality of EvidentialGene vs NCBI vs MAKER+Trinity for fish genes
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update to evigene2015june15
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remove relocated old copies
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relocate cacao scripts
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update current docs/
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rm dang osx.dsstores
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rm more old~ vers
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Initial commit
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update from evigene14jan10
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update to evigene15mar20
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update to evigene14jun20
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clean up rm some ~old vers
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update to evigene14dec30
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Daphnia magna and other Arthropod gene sets built with EvidentialGene
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EvidentialGene mRNA transcript classifier
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EvidentialGene goals 2015, part 1
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EvidentialGene goals 2015, part 2
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Transcript isoform/alternate classifier in Evigene
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Transcript isoform/alternate classifier in Evigene
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Home
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Merged and unmerged transcript assemblies
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Test Drive EvidentialGene
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Combining transcript sources in EvidentialGene
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EvidentialGene transcript assembly/annotation pipeline notes
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Bi-directional gene assembly
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EvidentialGene gene sets and citation
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Home
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Home
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Home
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Home
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Test Drive EvidentialGene
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Test Drive EvidentialGene
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Combining transcript sources in EvidentialGene
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EvidentialGene transcript assembly/annotation pipeline notes
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EvidentialGene transcript assembly/annotation pipeline notes
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EvidentialGene transcript assembly/annotation pipeline notes
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Combining assemblies to one transcriptome, 2015 june
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