Hi! Thanks for using Jillion! Yes we can package up a new release hopefully by year's end. Version 5.3. (5.2 was an internal release) We've also moved development to github https://github.com/JCVenterInstitute/Jillion I will keep this ticket open until the new release and to answer any further questions
added SamFileDataStore#forEachAligned and more helpers in FastqFileReader and FastqWriter. performance improvements to BufferedOutputStreams