cuiqinzhang

So happy to see your reply! I run the command "Integrate mkbwt reference.fasta" and the files in the bwts folder show as follows : 19.bwt 19.rbwt 6.bwt 6.rbwt

Hi Jin! I have used the newest in the Files tab and your example data. And I met the same problem as chaoi mentioned which is pasted as follows: Integrate fusion reference.fasta annot.ensembl.GRCh37.txt ./bwts accepted_hits.bam unmapped.bam dna.tumor.bam dna.normal.bam INTEGRATE version 0.2.6 Loading reference... 6 1 47000000 19 47000001 87000000 0.06 seconds Loading genes... 16867 transcripts loaded. 0.4 seconds Loading BWTs for chromosomes... 0.95 seconds Handling RNA data... Insert sizes and stds...